Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_O16
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.14
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 1.8
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 2.3
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 3.1
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 4.1
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 26 5.4
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 26 5.4
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 5.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.1
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 25 9.4
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 9.4
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 420 VPTPTKRPSSRTVSADSDSFTSTVFRSEPSLGSQSCSRP 536
V TPT P S + A + +FTS+ F + L + S S P
Sbjct: 601 VTTPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTP 639
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 399 STEPLNMVPTPTKRPSSRTVSADSDSFTSTVFRSEPSLGSQSCSRPFCLP 548
ST P M +P+ P+S + S S S++ T P+ S S + P P
Sbjct: 1566 STSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSP 1615
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -3
Query: 250 DNCLCVHSLPY--RGSVPIWIAIV--LIIFVLFCTFSLCSYL 137
D C+ H LPY +PI +V LI ++L+ F SY+
Sbjct: 6 DLCITRHLLPYIEHSVIPIIALLVLSLIFYILYICFGTTSYI 47
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +3
Query: 396 MSTEPLNMVPTPTKRPSSRTVSADSDSFTSTVFRSEPSLGS 518
MS P N T P TV +DS TS + S LGS
Sbjct: 173 MSGGPTNTASTSGPVPHDMTVLPQTDSNTSNLMSSGSQLGS 213
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = -3
Query: 499 LRKTVLVNESLSALTVRDDGRFVGVGTMFSGSVDIYIAFSLQRVLHVRSAHRMFVTGVQF 320
+ K++ + + AL + DG G G++ G+ DI LQ VLH++S V G
Sbjct: 405 VEKSLELKTYVPALKLAKDGSLTG-GSVSKGADDI-----LQHVLHLKSEQTGVVVGPDS 458
Query: 319 LPVRGY 302
P +
Sbjct: 459 TPTLSF 464
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/68 (22%), Positives = 31/68 (45%)
Frame = -3
Query: 529 LQLWDPKDGSLRKTVLVNESLSALTVRDDGRFVGVGTMFSGSVDIYIAFSLQRVLHVRSA 350
+++WD + KT+ L+A+ + G V +G + G++ I+ HV
Sbjct: 160 MKVWDSRSKDCIKTIEEKYPLTAVAIAQQGTQVFIGGI-DGAIKIW-DLRNNHCSHVLKG 217
Query: 349 HRMFVTGV 326
H+ +T +
Sbjct: 218 HKDIITSL 225
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 506 VLGVPELQQTFLFAGATXRVRYREHSVRVFLVLVGPK 616
++GV + + LFA Y EH V V LV + P+
Sbjct: 594 MVGVSSIDSSALFAFQRILKEYVEHQVEVHLVSLDPQ 630
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = -3
Query: 550 SGKQKGLLQLWDPKDGSLRKTVLVNESLSALTVRDDGRFVGVGTM 416
SG + LWD + G + + ++ ++ + DG+F+ G++
Sbjct: 393 SGSGDRTVCLWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSL 437
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.1
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = +3
Query: 291 TAGPYPRTGRNCTPVTNIRCALLTCSTRCKLKAM*MSTEPLNMVPTPTKRPSSRTVSADS 470
T P T T + + +C+T + ST P+ PT S+ T +
Sbjct: 315 TPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPA 374
Query: 471 DSFTSTVFRSEPSLG-SQSCSRPFCLP 548
S +ST S P L S SC+ +P
Sbjct: 375 -STSSTGTSSSPLLSTSTSCTTSTSIP 400
Score = 25.0 bits (52), Expect = 9.4
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Frame = +3
Query: 291 TAGPYPRTGRNCTPVTN--IRCALLTCSTRCKLKAM*MSTEPLNMVPTPTKRPSSRTVSA 464
T+ P P T + T + + +C+T + ST P+ PT S+ T
Sbjct: 259 TSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPP 318
Query: 465 D-SDSFTSTVFRSEPSLGSQSCSRPFCLP 548
S S T T PS S SC+ +P
Sbjct: 319 PASTSSTGTSSSPLPST-STSCTTSTSIP 346
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 508 DGSLRKTVLVNESLSALTVRDDGRFVGVGTMFSGSVDIYIAFSLQRVL 365
D S ++ ESL + V +F + T S ++ + + FS RVL
Sbjct: 431 DTSAEFSITERESLEFIDVLSGSQFSSLPTEDSSTISMNLEFSFPRVL 478
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 955
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 236 CAQPALPRLRAHLDRHRSHHLRTILYVQSMFI 141
C +PRLRAHL + + R +L ++ I
Sbjct: 921 CTSSEMPRLRAHLQDWTAMYRRRVLTPRAKLI 952
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,224
Number of Sequences: 5004
Number of extensions: 42834
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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