Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_O16
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 30 1.8
09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917 29 2.4
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008... 29 2.4
02_01_0790 + 5925048-5925165,5926133-5926268,5926832-5926913,592... 29 2.4
07_03_1721 - 29023979-29025295 29 3.2
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 29 4.2
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 29 4.2
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 28 7.4
03_05_0522 - 25161595-25162285,25162394-25163139 28 7.4
02_05_0282 - 27454714-27455814 28 7.4
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 27 9.7
03_02_1033 + 13550955-13551700,13552837-13553290,13553451-135536... 27 9.7
03_02_1031 + 13541327-13542072,13543209-13543662,13543823-135440... 27 9.7
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 27 9.7
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 291 TAGPYPRTGRNCTPVTNIRCALLTCSTRCK-LKAM*MSTEPLNMVPTPTKRPSSRTVSA 464
++G PR R + ++ CA C+ LK ++ EP P+P P++ TV+A
Sbjct: 176 SSGALPRPARRRSLADSLACAWPFSWITCRWLKGNAVAAEPAAATPSPLPSPATDTVAA 234
>09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917
Length = 328
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 447 SRTVSADSDSFTSTVFRSEPSLGSQSCSRPFCLPER 554
SR +AD+D+ S+ S PS + + P LP+R
Sbjct: 55 SRAAAADADTAQSSASSSRPSAAASTFGEPSSLPDR 90
>09_02_0523 +
10196272-10196375,10196551-10197488,10200247-10200896,
10201003-10201746
Length = 811
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = +3
Query: 300 PYPRTGRNCTPVTNIRCALLTCSTRCKLKAM*MSTEPLNMVPTPTKRPSSRTVSADSDSF 479
P TG C P + LL ++ L+ + + L+ +P ++ T S D D+
Sbjct: 90 PKDHTGCECKPKVVMLPELLRAASHGDLQRLRVLLGVLHDDESPAPTTTTTTTSQDDDAV 149
Query: 480 TSTVFRSEPSL 512
V+RS P L
Sbjct: 150 VLEVYRSAPLL 160
>02_01_0790 +
5925048-5925165,5926133-5926268,5926832-5926913,
5927772-5927947,5928594-5928680,5928817-5928956,
5929546-5929784
Length = 325
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 535 GLLQLWDPKDGSLRKTVLVNESLSALTVRDDGRF 434
G ++LWD + G + +T+ ++++ V DGRF
Sbjct: 168 GGVRLWDVRSGKIAQTLETKATVTSAEVSQDGRF 201
>07_03_1721 - 29023979-29025295
Length = 438
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 456 PSGTTAASWASGPCSVAPSTFTSPSVCS 373
P+G ++ W CSV+ S+ TS S CS
Sbjct: 315 PNGAWSSPWIQPNCSVSASSPTSTSTCS 342
>04_03_0819 +
20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -3
Query: 382 SLQRVLHVRSAHRMFVTGVQ 323
S +++LH +SAHRMF+ VQ
Sbjct: 518 SRKQILHTKSAHRMFLGSVQ 537
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 399 STEPL-NMVPTPTKRPSSRTVSADSDSF 479
ST+PL + P+P+ PSS T AD D+F
Sbjct: 103 STDPLLHPPPSPSSTPSSPTAIADHDAF 130
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Frame = -3
Query: 550 SGKQKGLLQLWDPKDGSLRKTVLVNESLSALTVRDDGRFVGVGTM-----FSGSVDIYIA 386
SG G +++WD S+ V + + ++A+ R G+ V VGT+ F D +
Sbjct: 371 SGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPGGKGVVVGTITGNCRFYEISDNLLK 430
Query: 385 FSLQRVLHVRSAHRM-FVTGVQFLP 314
Q L+ + + +TG QF P
Sbjct: 431 LETQIALNGKKKSSLKRITGFQFCP 455
>03_05_0522 - 25161595-25162285,25162394-25163139
Length = 478
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 224 ALPRLRAHLDRHRSHHLRTILYVQSMFIFR 135
A + + HLD H + + R LYV S F+ R
Sbjct: 220 AYAQRQCHLDNHGNFYWRGALYVNSYFLMR 249
>02_05_0282 - 27454714-27455814
Length = 366
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -2
Query: 533 SAAALGPQGRLAAEDGAGERVTVGA 459
S++ P G LAA +GAG R +VGA
Sbjct: 186 SSSVCNPGGNLAAANGAGGRGSVGA 210
>06_03_0191 -
17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/73 (27%), Positives = 32/73 (43%)
Frame = +3
Query: 396 MSTEPLNMVPTPTKRPSSRTVSADSDSFTSTVFRSEPSLGSQSCSRPFCLPERLXGFAIV 575
+S++ L V + ++RT+ A V++SE Q CS PF P + +
Sbjct: 735 LSSKKLPNVNSALNLFTTRTLMAYQSLSNPMVYKSEHQQMLQLCSSPFSDPSGWEESSCL 794
Query: 576 NILCASSLSSLGP 614
L +SLGP
Sbjct: 795 KFLLDKRDNSLGP 807
>03_02_1033 +
13550955-13551700,13552837-13553290,13553451-13553648,
13553726-13553807,13554496-13554590
Length = 524
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = -3
Query: 526 QLWDPKDGSLRKTVLVN-ESLSALTVRDDGRFVGVGTMFSGSVDIYIAFSLQRVLHVRSA 350
++WD + G L T++ + + + ++ +G V G+ I+ +R+L+ A
Sbjct: 381 RVWDLRSGRLWGTLMGHVKPVLGVSFSPNGYLVATGSE-DNFCRIW-DLRTKRMLYSIPA 438
Query: 349 HRMFVTGVQFLPVRGYGPAVASRSEAALL 263
H+ ++ V+F P GY A +S A L
Sbjct: 439 HKSLISHVKFEPQEGYYLATSSYDTKAAL 467
>03_02_1031 +
13541327-13542072,13543209-13543662,13543823-13544020,
13544098-13544179,13544868-13544962
Length = 524
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = -3
Query: 526 QLWDPKDGSLRKTVLVN-ESLSALTVRDDGRFVGVGTMFSGSVDIYIAFSLQRVLHVRSA 350
++WD + G L T++ + + + ++ +G V G+ I+ +R+L+ A
Sbjct: 381 RVWDLRSGRLWGTLMGHVKPVLGVSFSPNGYLVATGSE-DNFCRIW-DLRTKRMLYSIPA 438
Query: 349 HRMFVTGVQFLPVRGYGPAVASRSEAALL 263
H+ ++ V+F P GY A +S A L
Sbjct: 439 HKSLISHVKFEPQEGYYLATSSYDTKAAL 467
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 550 SGKQKGLLQLWDPKDGSLRKTVLVNESLSALTVRDDGRFVGVGTM 416
SG GL+++WD + + E ++A+ R DG+ VGT+
Sbjct: 434 SGCIDGLVRIWDVRRCQVVDWADTKEIITAVCYRPDGKAAVVGTI 478
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,104,480
Number of Sequences: 37544
Number of extensions: 309018
Number of successful extensions: 1098
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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