Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_O16
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical pr... 60 1e-09
Z81571-10|CAB04621.2| 341|Caenorhabditis elegans Hypothetical p... 29 2.8
Z81571-1|CAB04610.1| 341|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81504-5|CAB04120.2| 341|Caenorhabditis elegans Hypothetical pr... 29 2.8
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 28 5.0
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 6.6
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 6.6
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 27 8.7
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 27 8.7
U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide tr... 27 8.7
AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity ... 27 8.7
>Z75711-2|CAB00033.2| 425|Caenorhabditis elegans Hypothetical
protein K02B12.3 protein.
Length = 425
Score = 60.1 bits (139), Expect = 1e-09
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 14/131 (10%)
Frame = -3
Query: 493 KTVLVNESLSALTVRDDGRFVGVGTMFSGSVDIYIAFSLQRVLHVRSAHRMFVTGVQFL- 317
K + +S+S+L V D G F VGTM SGSV ++ +R+ +H +FVTG++F+
Sbjct: 296 KLLAKGQSISSLAVSDCGNFTAVGTM-SGSVLVFDTHECRRLYFSPESHGLFVTGIEFVS 354
Query: 316 --------PVRGYGPAVASRSEAALLSISVDNCLCVHSLPYRGSVP-----IWIAIVLII 176
++ P +AS ++A+++++ D + +H +PY P + I++V +I
Sbjct: 355 RTSPSICEDIQSETPGIASGFQSAVVTLAADKTMQLHRVPYPQPQPFSEYLLIISLVCLI 414
Query: 175 FVLFCTFSLCS 143
F +F + S
Sbjct: 415 FTWLSSFFIVS 425
>Z81571-10|CAB04621.2| 341|Caenorhabditis elegans Hypothetical
protein M01G12.13 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 199 WIAIVLI--IFVLFCTFSLCSYLGI 131
W+A+V I FVLF FS C +LG+
Sbjct: 195 WLAVVGIGAFFVLFMVFSYCIFLGV 219
>Z81571-1|CAB04610.1| 341|Caenorhabditis elegans Hypothetical
protein M01G12.1 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 199 WIAIVLI--IFVLFCTFSLCSYLGI 131
W+A+V I FVLF FS C +LG+
Sbjct: 195 WLAVVGIGAFFVLFMVFSYCIFLGV 219
>Z81504-5|CAB04120.2| 341|Caenorhabditis elegans Hypothetical
protein M01G12.13 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 199 WIAIVLI--IFVLFCTFSLCSYLGI 131
W+A+V I FVLF FS C +LG+
Sbjct: 195 WLAVVGIGAFFVLFMVFSYCIFLGV 219
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -3
Query: 502 SLRKTVLVNESLSALTVRDD--GRFVGVGTMFSGSVDIYIAFSLQRVLHVRSAH 347
S+RK +L NE+++A +RDD G F G + + +LQ H ++AH
Sbjct: 466 SMRKILLWNENITAEQLRDDLHGGFDGFKRSTYKMIANLLETALQEKEHEKAAH 519
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 399 STEPLNMVPTPTKRPSSRTVSADSD---SFTSTVFRSEPSLGSQSCSRPFCLPERLXGFA 569
+T+P++ T K PS+ ++ + D S +ST+ S+P+ S + P L ERL
Sbjct: 371 ATKPMDSPKTHRKLPSASSLFSQEDSSSSSSSTLTPSKPTTNGTSSAIPNDLLERLRADI 430
Query: 570 IVNI 581
+V +
Sbjct: 431 MVEM 434
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 399 STEPLNMVPTPTKRPSSRTVSADSD---SFTSTVFRSEPSLGSQSCSRPFCLPERLXGFA 569
+T+P++ T K PS+ ++ + D S +ST+ S+P+ S + P L ERL
Sbjct: 357 ATKPMDSPKTHRKLPSASSLFSQEDSSSSSSSTLTPSKPTTNGTSSAIPNDLLERLRADI 416
Query: 570 IVNI 581
+V +
Sbjct: 417 MVEM 420
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 487 VLVNESLSALTVRDDGRFVGVGTMFSGSVDIYIAFSLQRV 368
VLV++ + +TV DG F G + +G ++I+ F L ++
Sbjct: 2404 VLVDDKIECVTVTRDGEFAVTGAV-NGRINIWRMFPLTKL 2442
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 487 VLVNESLSALTVRDDGRFVGVGTMFSGSVDIYIAFSLQRV 368
VLV++ + +TV DG F G + +G ++I+ F L ++
Sbjct: 2404 VLVDDKIECVTVTRDGEFAVTGAV-NGRINIWRMFPLTKL 2442
>U39666-2|AAA80411.2| 835|Caenorhabditis elegans Oligopeptide
transporter protein 2 protein.
Length = 835
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 474 SFTSTVFRSEPSLGSQSC 527
+F S +FRS+P LG SC
Sbjct: 200 TFISPIFRSQPCLGQDSC 217
>AF000418-1|AAC39119.1| 796|Caenorhabditis elegans low-affinity
peptide transporter protein.
Length = 796
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 474 SFTSTVFRSEPSLGSQSC 527
+F S +FRS+P LG SC
Sbjct: 161 TFISPIFRSQPCLGQDSC 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,695,536
Number of Sequences: 27780
Number of extensions: 257417
Number of successful extensions: 1008
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -