Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O15
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   1.7  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    27   2.3  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.3  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   3.0  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    25   6.9  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   9.1  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    25   9.1  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 353  LH*FXCKQYLHSTF*DVIEDFFIKKWEFIY 264
            L+ F  +QYL  +  D++ED  ++ WE++Y
Sbjct: 1421 LNKFHSRQYLFLSR-DLVEDLSLRVWEYVY 1449


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 264 LVYNTIPHKPFASFYTTKTYCIHYLYVISLIYTCFGKHIF 145
           L  +T+P +   + Y T  + IH L  +S +Y   GK  F
Sbjct: 159 LARDTVPWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAF 198


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 68  ITICTVRFVNYH*YVDLQKYIVKLFVNICLPKQVYI 175
           +T+  +R +    Y  L+ +++K  VNIC   ++YI
Sbjct: 343 LTLDCIRLIPTEQYYPLRLHLLKSLVNICRSTRLYI 378


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 440 VNFNCSENKHNFVSDSCFTK*YDKPV 363
           VN   S+ KH F ++S  T  YD+P+
Sbjct: 690 VNLQFSKEKHEFTAESDDTTSYDEPL 715


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 490 NF-YIVADKKNHIXYIYKSILIVQKTNTILLVTPALRSSMTNQCFVDCINLXVNNIY-TQ 317
           NF ++  D   +  ++Y+ ++   + N I  +      S  ++ F+D +    NNI  TQ
Sbjct: 63  NFRFLEMDLATNYKFLYQFMVEDSEINKITHIINFAAESSVDRSFIDPLYFTKNNILSTQ 122

Query: 316 RFKMSLRIFL*KNGNL 269
                +RI L K   L
Sbjct: 123 NLLECVRILLGKKEEL 138


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 352 NQRNTGLSYYFVKQESLTKLCLFSEQLKLTCKC 450
           N++   +++ F+   S T+LC+      L C C
Sbjct: 168 NKKLLQITWNFLNDASRTRLCVLYPPFSLACGC 200


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 273 IYLLVYNTIPHKPFASFYTTKTYCIHYLYVISLIYTCFGKHIFTNNFTIYFCKSTY*W*L 94
           IY   Y    H  +   +  +TY +     IS IY+ F  H  T     +F  ++Y W L
Sbjct: 250 IYNSPYIITLHNQYIYIWNKETYAMIQQIGISNIYSTFSCHKNT-----FFTSNSYVWIL 304

Query: 93  T 91
           T
Sbjct: 305 T 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,183
Number of Sequences: 5004
Number of extensions: 40074
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)