Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O15
         (526 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0649 - 5259038-5259195,5259824-5259887,5260446-5260512,526...    27   9.2  
06_02_0111 - 11958372-11958713,11959367-11959633,11959729-119601...    27   9.2  
03_01_0567 + 4186620-4186694,4186766-4186852,4187293-4187932,418...    27   9.2  

>11_01_0649 -
           5259038-5259195,5259824-5259887,5260446-5260512,
           5260534-5260607,5260725-5261510,5262623-5262685
          Length = 403

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 90  SLITINMLIYKN-IL*SYS*IYVCQSKYILMI*RIDNGYNTF*LCRNLQM 236
           S I  + L+ +N IL  YS +Y+C+S+Y  +I R+         C+ +++
Sbjct: 311 SCILEHALVLENLILQIYSKLYICESRYCHLIARMPFSMYAIFSCKEIEI 360


>06_02_0111 -
           11958372-11958713,11959367-11959633,11959729-11960124,
           11961246-11961320
          Length = 359

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -2

Query: 258 YNTIPHKPFASFYTTKTYCIHYLYVISLIYTCFGKHIFTNNFTIYFCKS 112
           +N++  K  A F  ++    H++ V +++   F + +FT++   +FC S
Sbjct: 102 FNSVA-KSLAEFKHSQDVSSHHVVVANMVPGSFYERLFTSDSVHFFCSS 149


>03_01_0567 +
           4186620-4186694,4186766-4186852,4187293-4187932,
           4188009-4188094,4189620-4190010,4190102-4190172,
           4190738-4190856,4191517-4191793
          Length = 581

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -3

Query: 284 KKWEFIYWCIIQSRTSHLQVSTQLKRIVSIIYTSYH*YILALA 156
           +KWE +Y+C+      H+Q S     +   +   +H  I++++
Sbjct: 28  EKWERVYFCVTWGLLLHVQFSFLHSLLEEYLQQDFHLLIISMS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,742,077
Number of Sequences: 37544
Number of extensions: 186996
Number of successful extensions: 283
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)