Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_O12
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 30 2.1
12_01_0130 + 977181-977828 29 2.8
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879... 29 2.8
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 4.8
07_03_1586 - 27929947-27930056,27930143-27930286,27930377-279307... 29 4.8
05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625 29 4.8
02_04_0488 + 23397480-23397687,23397777-23397805,23398462-233985... 29 4.8
10_07_0022 + 11957159-11957334,11957481-11957731,11958009-11958274 28 6.4
12_02_1147 - 26459481-26460124,26460241-26460382,26461658-264616... 28 8.5
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 28 8.5
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 29.9 bits (64), Expect = 2.1
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -1
Query: 306 KTEKTPVRTSALQINATATTPVNKVIIPEKVPRDLSNSVSPITP-PRKRTFSTSSGGFEV 130
+T+ T + QIN + ++ + D+ +S P P+ + T+ G E
Sbjct: 349 ETQSTKPSSDGQQINKEPPS-----VVEDNKQEDVEPMLSECNPEPQSESRLTAGGSDET 403
Query: 129 NELESPTKKLKDASETKKRIDEK 61
E SP K LKDA + K +I +K
Sbjct: 404 QEAISP-KSLKDAVKPKHKIKKK 425
>12_01_0130 + 977181-977828
Length = 215
Score = 29.5 bits (63), Expect = 2.8
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = +2
Query: 404 ILECFASALLTDVACSRRAKATNADVSSMNCTVIGPNGLNSCVISFLCHSLGNAK*NTWS 583
+L FASA T V R A + V S V N ++C CHS G+
Sbjct: 93 VLPSFASARNTLVLKELR-NANSVQVQSETALVAANNAHSNCT-GGTCHSSGSGGQQQNC 150
Query: 584 LGGSGSGPARFMNG 625
GG SG + NG
Sbjct: 151 AGGGNSGKNKGKNG 164
>08_02_1014 -
23586552-23587224,23587402-23587463,23587735-23587950,
23588125-23588209,23589232-23589389,23589505-23589625,
23590081-23590243,23590330-23590415,23590660-23590742,
23590816-23591677,23593266-23593693
Length = 978
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = -1
Query: 297 KTPVRTSALQINATATTPVNKVIIPEKVPRDLSNSVSPITPPRKRTFSTSSGGFEVNELE 118
+T + +N ++V+ +VP D +SVS + P+ + S G +
Sbjct: 195 ETNTAATVKNLNDKTKDMPSEVLASVEVPDD-DHSVSAVKLPQSSSQVASLGSRKTESNM 253
Query: 117 SPTKKLKDASETKKRIDEKIIDRF 46
PT +++ S TK +DE ++ RF
Sbjct: 254 KPTTPVENGSYTKD-LDEALVCRF 276
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 228 IPEKVPRDLSNSVSPITPPRKRTFSTSSGGFEVNELESPTKKLKDASETKKRIDE 64
+PE V + VS P KR SGG +V ++E ++ + +S KK + E
Sbjct: 291 LPEFVTFEGIEDVSVAIPHTKRKRMDKSGGDDVMDMEKKPRRGESSSRKKKVLPE 345
>07_03_1586 -
27929947-27930056,27930143-27930286,27930377-27930704,
27931189-27931404,27932099-27932284,27932439-27932521,
27932621-27932752,27932943-27932999,27933352-27933412,
27933807-27933889,27933975-27934134
Length = 519
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -1
Query: 591 PPRDHVFHLAFPREWQRNEITQLFSPFGPI--TVQFID 484
PPR ++F P+E+ ++ LF FG I T FID
Sbjct: 437 PPRANLFVYDIPQEYGDEDLANLFQEFGRILSTKVFID 474
>05_04_0373 + 20732358-20732675,20733555-20734440,20734523-20735625
Length = 768
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 279 SALQINATATTPVNKVIIPEKVPRDLSNSVSPITPP 172
+ L+ N P V EKV RDLS++V + PP
Sbjct: 86 NTLERNTLKKKPKEAVTTEEKVKRDLSHTVHGVHPP 121
>02_04_0488 +
23397480-23397687,23397777-23397805,23398462-23398564,
23398811-23398982,23399380-23399440,23399757-23399889,
23400438-23400709,23400776-23400843,23401096-23401235,
23401413-23401499,23401580-23402088,23402173-23402990,
23403024-23403222,23403662-23403817
Length = 984
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 443 ACSRRAKATNADVSSMNCTVIGPNGLNSCVIS 538
AC RRAKA D S +I L+SC S
Sbjct: 501 ACERRAKAIKHDTSENRAKIIEIKSLDSCETS 532
>10_07_0022 + 11957159-11957334,11957481-11957731,11958009-11958274
Length = 230
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 555 WETPNETRGPWEAVVPVPPGL 617
W T + RG WEAV+ VP G+
Sbjct: 170 WGTVDAVRGEWEAVMWVPEGV 190
>12_02_1147 -
26459481-26460124,26460241-26460382,26461658-26461699,
26463377-26463502
Length = 317
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/78 (33%), Positives = 30/78 (38%)
Frame = -1
Query: 258 TATTPVNKVIIPEKVPRDLSNSVSPITPPRKRTFSTSSGGFEVNELESPTKKLKDASETK 79
T TP I EKV S I P R R S G E E + ++ KDA K
Sbjct: 103 TGDTPRRSARISEKVKAFDSPEGEKI-PKRSRNSSGRKGKQEKKEA-TENEEAKDAEADK 160
Query: 78 KRIDEKIIDRFDSEAKPA 25
+ E D E KPA
Sbjct: 161 EAPSEDAPKETDVETKPA 178
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -1
Query: 276 ALQINATATTPVNKVIIPEKVPRDLSNSVSPI---TPPRKRTFSTSSGGFEVN 127
++QI A+A TPV +IP +S + PP R GG+++N
Sbjct: 156 SVQIFASAVTPVGAGLIPTGAVSPVSGTPFDFRAPAPPGARIADVPGGGYDIN 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,813,853
Number of Sequences: 37544
Number of extensions: 374412
Number of successful extensions: 1224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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