Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_O12
(714 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC050029-1|AAH50029.1| 639|Homo sapiens PARN protein protein. 100 6e-21
AJ005698-1|CAA06683.1| 639|Homo sapiens poly(A)-specific ribonu... 100 6e-21
AB209568-1|BAD92805.1| 316|Homo sapiens zinc finger protein 265... 30 7.2
U69546-1|AAB09040.1| 490|Homo sapiens RNA-binding protein BRUNO... 30 9.5
BC036391-1|AAH36391.1| 521|Homo sapiens CUGBP2 protein protein. 30 9.5
AL157704-2|CAH70230.1| 490|Homo sapiens CUG triplet repeat, RNA... 30 9.5
AL157704-1|CAH70231.1| 498|Homo sapiens CUG triplet repeat, RNA... 30 9.5
AL136320-2|CAI20169.1| 490|Homo sapiens CUG triplet repeat, RNA... 30 9.5
AL136320-1|CAI20168.1| 498|Homo sapiens CUG triplet repeat, RNA... 30 9.5
AF432906-1|AAL27627.1| 488|Homo sapiens neuroblastoma apoptosis... 30 9.5
AF295068-3|AAK72223.1| 484|Homo sapiens neuroplastoma apoptosis... 30 9.5
AF295068-2|AAK92699.1| 490|Homo sapiens neuroplastoma apoptosis... 30 9.5
AF295068-1|AAK72224.1| 509|Homo sapiens neuroplastoma apoptosis... 30 9.5
AF090694-1|AAD13761.1| 509|Homo sapiens apoptosis-related RNA b... 30 9.5
AF090693-1|AAD13760.1| 508|Homo sapiens apoptosis-related RNA b... 30 9.5
AF036956-1|AAD02074.1| 490|Homo sapiens neuroblastoma apoptosis... 30 9.5
>BC050029-1|AAH50029.1| 639|Homo sapiens PARN protein protein.
Length = 639
Score = 100 bits (239), Expect = 6e-21
Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Frame = -1
Query: 699 LSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPLPPRDHVFHLAFPREWQRNEITQLF 520
+S S LI+PF NK+FL R D P++NL GP+ P RDHV H+ FP+EW+ +++ QLF
Sbjct: 408 VSARSKLIEPFFNKLFLMRV--MDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLF 465
Query: 519 SPFGPITVQFIDDTSAFVALARREQ---ATSVSKALAKHSKITLTSYYKYKK 373
S FG I + +IDDTSAFV+L++ EQ A + SK + T Y K+
Sbjct: 466 SAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQ 517
>AJ005698-1|CAA06683.1| 639|Homo sapiens poly(A)-specific
ribonuclease protein.
Length = 639
Score = 100 bits (239), Expect = 6e-21
Identities = 51/112 (45%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Frame = -1
Query: 699 LSITSPLIKPFLNKVFLSRTAHQDSPFINLAGPEPLPPRDHVFHLAFPREWQRNEITQLF 520
+S S LI+PF NK+FL R D P++NL GP+ P RDHV H+ FP+EW+ +++ QLF
Sbjct: 408 VSARSKLIEPFFNKLFLMRV--MDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLF 465
Query: 519 SPFGPITVQFIDDTSAFVALARREQ---ATSVSKALAKHSKITLTSYYKYKK 373
S FG I + +IDDTSAFV+L++ EQ A + SK + T Y K+
Sbjct: 466 SAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSKYAESYRIQTYAEYMGRKQ 517
>AB209568-1|BAD92805.1| 316|Homo sapiens zinc finger protein 265
isoform 1 variant protein.
Length = 316
Score = 30.3 bits (65), Expect = 7.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 210 RDLSNSVSPITPPRKRTFSTSSGGFEVNELESPTKKLKDASETKKRIDEKIIDRF 46
R S S + PRKR++S+SS E N S ++ K+R + +RF
Sbjct: 259 RSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERF 313
>U69546-1|AAB09040.1| 490|Homo sapiens RNA-binding protein BRUNOL3
protein.
Length = 490
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 10 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 42
>BC036391-1|AAH36391.1| 521|Homo sapiens CUGBP2 protein protein.
Length = 521
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 29 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 61
>AL157704-2|CAH70230.1| 490|Homo sapiens CUG triplet repeat, RNA
binding protein 2 protein.
Length = 490
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 10 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 42
>AL157704-1|CAH70231.1| 498|Homo sapiens CUG triplet repeat, RNA
binding protein 2 protein.
Length = 498
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 10 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 42
>AL136320-2|CAI20169.1| 490|Homo sapiens CUG triplet repeat, RNA
binding protein 2 protein.
Length = 490
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 10 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 42
>AL136320-1|CAI20168.1| 498|Homo sapiens CUG triplet repeat, RNA
binding protein 2 protein.
Length = 498
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 10 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 42
>AF432906-1|AAL27627.1| 488|Homo sapiens neuroblastoma
apoptosis-related RNA-binding protein isoform 4 protein.
Length = 488
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 10 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 42
>AF295068-3|AAK72223.1| 484|Homo sapiens neuroplastoma
apoptosis-related RNA-binding protein 3 protein.
Length = 484
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 10 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 42
>AF295068-2|AAK92699.1| 490|Homo sapiens neuroplastoma
apoptosis-related RNA-binding protein 1 protein.
Length = 490
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 10 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 42
>AF295068-1|AAK72224.1| 509|Homo sapiens neuroplastoma
apoptosis-related RNA-binding protein 2 protein.
Length = 509
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 29 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 61
>AF090694-1|AAD13761.1| 509|Homo sapiens apoptosis-related RNA
binding protein protein.
Length = 509
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 29 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 61
>AF090693-1|AAD13760.1| 508|Homo sapiens apoptosis-related RNA
binding protein protein.
Length = 508
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 34 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 66
>AF036956-1|AAD02074.1| 490|Homo sapiens neuroblastoma
apoptosis-related RNA binding protein protein.
Length = 490
Score = 29.9 bits (64), Expect = 9.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 600 EPLPPRDHVFHLAFPREWQRNEITQLFSPFGPI 502
+P P +F PR W E+ +LF P+G +
Sbjct: 10 QPDPDAIKMFVGQIPRSWSEKELKELFEPYGAV 42
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,613,300
Number of Sequences: 237096
Number of extensions: 1928598
Number of successful extensions: 5632
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5630
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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