Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O11
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.16 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.16 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   0.37 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   3.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 193  SPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTFS 300
            +PGIPP   FL+   TT +  L     NG  I  F+
Sbjct: 1498 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYFT 1533


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 193  SPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTFS 300
            +PGIPP   FL+   TT +  L     NG  I  F+
Sbjct: 1494 APGIPPAATFLSPNSTTLVLRLHVWPDNGCPILYFT 1529


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.37
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 184 GRFSPGIPPLEWFLTKFVTTFLPNLFEMRVNGVIIFTFSQFI 309
           GRF P     E FLT     +L +  E+R+    IFTFS  I
Sbjct: 186 GRFVP-----EGFLTSCSFDYLTDTNEIRIFVATIFTFSYCI 222


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 308  MN*ENVKMITPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFD 177
            MN +     + + +  NK+G   ++   R H+  G+P E  P D
Sbjct: 1045 MNLKTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVP-EQPPHD 1087


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 230 FVRNHSNGGIPGENLPFDIHNRYKLTLYFIL 138
           FV NH       + L +    RYK+ + F+L
Sbjct: 304 FVDNHDTQRDNPQILTYKYSKRYKMAVAFML 334


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 218 GFSRNSLPHF 247
           GF + +LPHF
Sbjct: 262 GFRKRTLPHF 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,040
Number of Sequences: 438
Number of extensions: 1735
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)