Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O07
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    54   2e-08
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    32   0.095
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   2.1  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    26   4.7  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   4.7  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   8.3  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
 Frame = -3

Query: 721 AVNALIHLXKTHE-GNLTIITIGALTNLALAIKTDPTFLGRLAHVYIGAGHIHT--EEYP 551
           AV+ +I   + +E G +TI TIG LTN+ALA+   P  + R   + + AG         P
Sbjct: 102 AVDFIIDTLRNNEPGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITP 161

Query: 550 TAEFNAHMDVEAYHVVTENANPEKVTIFPFSQV-QKYCNFSREWRI----NVLGAIDTEI 386
            AEFN ++D  A  +V  +  P  + + P     Q + +  R  R+    N +G +    
Sbjct: 162 AAEFNIYVDPHAAQMVLSSGIP--IVMMPLDITHQLHTSAKRIARMEALPNRVGPVVAAW 219

Query: 385 IRAQNKYERISLPREDRWQALDPATVALFLRPDL 284
           +R +  YE       D     DP TV   LRPD+
Sbjct: 220 LRMEKAYEAKKY-GTDGGPLHDPNTVMWLLRPDI 252


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 31.9 bits (69), Expect = 0.095
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 721 AVNALIHLXKTHEGNLTIITIGALTNLALAIKTDPTFLGRLAHVYIGAGHIHTE 560
           A   +I + K +   +TI+  G +TNLA+A+   P        + I  G++ ++
Sbjct: 136 AAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYVDSQ 189


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 477 LQYSPSHRCRNIVTLAGSG 421
           L YS   RC NIV +AGSG
Sbjct: 742 LTYSAIRRCDNIVLIAGSG 760


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/40 (25%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -2

Query: 185 FASLTLS-RLKSIDSFYWISSRTMPENSPNDNTRNTDLSP 69
           ++SL+++ R+K   +  ++ S+ +P+N+   +  N D+ P
Sbjct: 221 YSSLSIAERIKQAQNTPFLESKVLPQNNETSDEENVDVKP 260


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 252 SLCVEKXRGITSNSFVDKEDANVRIAYSVKTEEYRQ 145
           S+ +EK   I    F +KE  +VRI+ + +  EY Q
Sbjct: 70  SVLLEKLENIYVERFNEKEPRDVRISLTFQPNEYLQ 105


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 435 KLQYFCTCEKGNIVTFSGFA-FSVTTW 512
           K  +   C+KGN+V   GF+ FS+  W
Sbjct: 105 KQDFLNDCKKGNLVREDGFSIFSILRW 131


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 597 HTSTSEPDTYIPKNIRRQSSMLTWT 523
           H+S ++ DTY+P   +R+  +L  T
Sbjct: 635 HSSAAQDDTYLPSPTKRKMPLLRQT 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,274
Number of Sequences: 5004
Number of extensions: 63357
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)