Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O03
         (323 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   2.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   3.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    20   8.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    20   8.6  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    20   8.6  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    20   8.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    20   8.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   8.6  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   8.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = +3

Query: 216 PQAIANYFNNFSKMYW 263
           P  I NY   F   YW
Sbjct: 333 PDGIRNYLTKFVSEYW 348


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           NY NN+ K+Y++
Sbjct: 343 NYNNNYKKLYYN 354


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 231 NYFNNFSKMY 260
           NY NN+ K+Y
Sbjct: 108 NYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 231 NYFNNFSKMY 260
           NY NN+ K+Y
Sbjct: 108 NYNNNYKKLY 117


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 101 NNYNNYKKLYYN 112


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 101 NNYNNYKKLYYN 112


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 101 NNYNNYKKLYYN 112


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 101 NNYNNYKKLYYN 112


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 101 NNYNNYKKLYYN 112


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 101 NNYNNYKKLYYN 112


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 101 NNYNNYKKLYYN 112


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 101 NNYNNYKKLYYN 112


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 99  NNYNNYKKLYYN 110


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 109 NNYNNYKKLYYN 120


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = +3

Query: 231 NYFNNFSKMYWD 266
           N +NN+ K+Y++
Sbjct: 344 NNYNNYKKLYYN 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,008
Number of Sequences: 438
Number of extensions: 762
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)