Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O02
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    29   0.41 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.6  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   2.2  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   2.9  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   8.8  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   8.8  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   8.8  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 495 HYLRHSLRR--ICRLYRCSPL*FREGLLRVCRDXHTSVVPVSC 617
           H   HS  R  +C    CS   +R+  L++ +  HT+V P SC
Sbjct: 43  HLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSC 85


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 585  PYTHAEDLLEIKEENNDKGDIFYASCDEDNDCVTIELPCE 466
            P+ H+  L +I+ E+  +GD+FY +  +  D  +   P +
Sbjct: 1024 PHRHSVSLGQIRGESEVEGDVFYDAPSDKEDLGSSNAPLD 1063


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 477 LPCEEEIPVQTEIDSVKNDSSAITLECD---MKMLSPMTLSPKS 355
           +P   E+PV+T +DSV   ++A++   +   M   SP+   P+S
Sbjct: 147 IPNTPELPVKTTLDSVNEIAAALSTHAESSPMDATSPVDSMPES 190


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 302 KSELRLVCAGDKSKLSSTDFGDRVIGESIFMSHSNVIAE 418
           + E  L  + D  K ++ DFGD    E     H N++A+
Sbjct: 239 EDEEGLSLSEDGKKFANIDFGDYSSSEEFLKEHLNILAD 277


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 423 RSSPNQSLSELGFLLRREVLS*RNHYLRHSLRRICRLYR 539
           RS       E  FL+    +S  NH+ +  L R C+ YR
Sbjct: 75  RSLTTLGKEETDFLVDAVFVSESNHHEKEILHRTCKRYR 113


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 387 MLSPMTLSPKSVEDNLLLSPAHTNLSSDLG 298
           M  P+TLSP S+   L   P + +++S LG
Sbjct: 415 MQQPLTLSPSSIPSGL---PTYAHVNSPLG 441


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 200 RPVQGNSSDKDSHQRSGNS 256
           +P+ G +SD +S+++ GN+
Sbjct: 79  KPISGRASDPESYEQEGNA 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,110
Number of Sequences: 5004
Number of extensions: 45320
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)