Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_O02
(618 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 31 0.55
08_02_0766 - 20993207-20993307,20993510-20993612,20993686-209937... 28 5.2
03_01_0380 + 2955102-2955357,2955468-2956189 28 5.2
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 28 5.2
04_03_0298 + 14080353-14080927,14081041-14081554 28 6.8
04_03_0293 - 14001443-14001956,14002070-14002644 28 6.8
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 27 9.0
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 27 9.0
03_05_0249 - 22368986-22369627,22374000-22374890 27 9.0
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 354 PTSETGSSARASSCRTPT*SLNYRSSPNQS 443
P + G A SC +PT SL + SPN+S
Sbjct: 12 PPEQVGDGVEARSCASPTPSLRRKGSPNRS 41
>08_02_0766 -
20993207-20993307,20993510-20993612,20993686-20993730,
20993848-20993916,20994463-20994510,20995357-20995404,
20995492-20995551,20996063-20996119,20996403-20996471,
20996511-20996603
Length = 230
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 276 AVTITTRSLSQSSGWCAPETRANYLPPTSETGSSARAS 389
++T+ T +LS S GW AP AN+ +E+ S ++A+
Sbjct: 91 SLTVMT-ALSVSLGWVAPNLDANFKSNKAESKSKSKAN 127
>03_01_0380 + 2955102-2955357,2955468-2956189
Length = 325
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = -1
Query: 549 EENNDKGDIFYASCDEDNDCVTIELPCEEEIPVQTEIDSVKN-DSSAITLECDMKMLSPM 373
+ N K I S DED + ++ ELP EI EI +V N +S + + L+ +
Sbjct: 215 DSNLKKVRIALDSDDEDENILSYELPAISEIS-SVEIGNVSNVNSLSAAADYLSAPLNVL 273
Query: 372 TLSPKSVEDNLLLSPAHTNLS 310
T + K VE+ + + +++
Sbjct: 274 TSAAKEVEEPICIDAIDVDMN 294
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/90 (22%), Positives = 41/90 (45%)
Frame = -1
Query: 576 HAEDLLEIKEENNDKGDIFYASCDEDNDCVTIELPCEEEIPVQTEIDSVKNDSSAITLEC 397
+++D +++ ++D + +S D+D+D E +E+P + E S + D S E
Sbjct: 1692 NSDDGMDLSSSDDDDDSLDSSSSDDDDDESGDEDDGSDELPAEME-SSEEEDGSDGQDES 1750
Query: 396 DMKMLSPMTLSPKSVEDNLLLSPAHTNLSS 307
M+S ED + P + L++
Sbjct: 1751 SSSMVSTDEEDESDEEDEIPEKPESSKLTA 1780
>04_03_0298 + 14080353-14080927,14081041-14081554
Length = 362
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 618 DRILAQHSYXHPYTHAEDLLEIKEENNDK 532
+R+ HS H Y HA DLL+ DK
Sbjct: 44 ERVKYLHSVNHAYNHAVDLLDDGSATRDK 72
>04_03_0293 - 14001443-14001956,14002070-14002644
Length = 362
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 618 DRILAQHSYXHPYTHAEDLLEIKEENNDK 532
+R+ HS H Y HA DLL+ DK
Sbjct: 44 ERVKYLHSVNHAYNHAVDLLDDGSATRDK 72
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 222 PTRIPTKDLATPLNQIH*AVTITTRSLSQSSGWCAPETR--ANYLPPTS 362
PT IP ATP +Q T TT + SS +P + A +PPT+
Sbjct: 57 PTPIPPARAATPSSQADDVPTTTTATSPPSSAPSSPPSSPPAESVPPTA 105
>05_07_0236 -
28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 27.5 bits (58), Expect = 9.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 528 DIFYASCDEDNDCVTIELPCEE 463
++ +A CD +DCV+I+ C +
Sbjct: 368 EVIFALCDAGDDCVSIQTGCSD 389
>03_05_0249 - 22368986-22369627,22374000-22374890
Length = 510
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 558 EIKEENNDKGDIFYASCDEDNDCVTIELPCEEEIPVQTE 442
+I EE+ + D Y CD D D V + L E E ++ E
Sbjct: 252 KIIEEHKTRRDAKYGGCDGDGDFVDVLLGLEGEERLEEE 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,261
Number of Sequences: 37544
Number of extensions: 285153
Number of successful extensions: 725
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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