Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_O01
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251     28   6.2  
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986...    28   8.1  

>04_04_1130 - 31112318-31112623,31113131-31113280,31113613-31114251
          Length = 364

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 91  AMHDHAIFDYLFI*KCIIEYNFSVKQSHIFILFFKL 198
           A+  H  F+ + +  CI++ NF V+ + I  +FF L
Sbjct: 245 ALSFHQFFEGVGLGGCIVQANFKVRATVIMAIFFSL 280


>04_03_0184 +
           12395349-12395542,12396821-12397467,12398119-12398655,
           12399087-12399239,12399315-12399809,12400032-12400555
          Length = 849

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 313 YSWGLLKYMVFDKRLSITG 257
           YSW L  + +FD  L+ITG
Sbjct: 109 YSWNLSSFSIFDASLNITG 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,835,064
Number of Sequences: 37544
Number of extensions: 318364
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)