Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N24
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   0.58 
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   1.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   4.1  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    23   9.4  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    23   9.4  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    23   9.4  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    23   9.4  

>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 0.58
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 176 VYVDPKLRVIKGIIARDLSRTKAEVTVTSGGVGATNVTLHLK 51
           V+  PK   +KGI++R  S     V VT+  VG T   L LK
Sbjct: 49  VFTSPKTDAVKGIVSRSSSNV-VRVNVTA-KVGRTTHVLKLK 88


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 193 FINGYPLTTTFSVEINKLFT 252
           F+NGY LT TF  ++NK F+
Sbjct: 247 FLNGYALTPTFR-DVNKKFS 265


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -3

Query: 137 IARDLSRTKAEVTVTSGGVGATNVT---LHLKSE 45
           I RDLSRT   + + + G G   V    LHL S+
Sbjct: 365 IDRDLSRTGTSIIIVTPGTGLYEVNEKMLHLTSK 398


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 260 GTKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKG 141
           G     +L+S E    K  P I  D+ YVY + + R++KG
Sbjct: 163 GEDAERVLLSPEGSSYKVAPEI--DQTYVYNEVRRRLVKG 200


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -3

Query: 278 AKDFVDGTKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIARDLSRTKAEVT 99
           AK   D  K     ++ E+   K  PL + D    Y++    +I+     DL + KAEV 
Sbjct: 4   AKKIDDDEKQLVKPVNKEQTYKKPIPLEEDD----YIEGLSYIIQQQYFPDLPKLKAEVV 59

Query: 98  VTSGGVGATNVTLHLKSER 42
           + S  VG+ +     + E+
Sbjct: 60  LESEEVGSFDAQNESRDEK 78


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 308 LSVVYVLNIEAKDFVDGTKVNN 243
           L  +Y+L+   + F DG K NN
Sbjct: 60  LGALYILDSIVRSFQDGAKKNN 81


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 129 RFIPNESRSHRDKWRCRGYQCDSSLKKRKRGG 34
           R  P+E RS     R    + +  L++ +RGG
Sbjct: 4   RMQPHEDRSRSGMSRSEAMELEDQLEEEERGG 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,788
Number of Sequences: 5004
Number of extensions: 24523
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)