Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N24
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0772 - 6455042-6458107                                           27   2.9  
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981           27   3.8  
02_01_0353 + 2545982-2549833                                           27   3.8  
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7...    26   6.6  
10_08_0948 + 21754985-21755290,21756042-21756297,21756845-217569...    26   8.7  
08_02_1608 - 28205483-28205851,28206244-28206522                       26   8.7  
08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925     26   8.7  
03_01_0345 - 2708483-2709346                                           26   8.7  

>11_01_0772 - 6455042-6458107
          Length = 1021

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/67 (20%), Positives = 32/67 (47%)
 Frame = -3

Query: 236 ISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIARDLSRTKAEVTVTSGGVGATNVTLH 57
           IS  +     +P + +D+D V ++   + +K + +  +S  +       GG+G T + L+
Sbjct: 150 ISEHRFPQYSFPRLMKDEDLVGMENNRQHLKQLFSHGISALRVISVWGMGGMGKTTLVLN 209

Query: 56  LKSERGE 36
           +  +  E
Sbjct: 210 VYEQHKE 216


>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
          Length = 1158

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 248  NNLLISTEKVVVKGYPLIKRDKDYVYVDPKL 156
            N+L I  +  +V  YP +  D D +Y  P+L
Sbjct: 1124 NSLYIGAQDALVAAYPALDDDGDNIYSRPEL 1154


>02_01_0353 + 2545982-2549833
          Length = 1283

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 248  NNLLISTEKVVVKGYPLIKRDKDYVYVDPKL 156
            N+L I  +  +V  YP +  D D +Y  P+L
Sbjct: 1249 NSLYIGAQDALVAAYPALDDDGDNIYSRPEL 1279


>01_01_0001 +
           2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
           7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
           9504-9562
          Length = 616

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 272 DFVDGTKVNNLLISTEKV 219
           DFVDGTK N+++ S ++V
Sbjct: 366 DFVDGTKSNSVVASKDRV 383


>10_08_0948 +
           21754985-21755290,21756042-21756297,21756845-21756999,
           21757077-21757349,21757582-21757776,21757867-21758058
          Length = 458

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = -3

Query: 233 STEKVVVKGYPLIKRDKDYVYVDPKLRV-----IKG-IIARDLSRTKAEVTVTSGGVGAT 72
           + E    K +P    D  +  V P L+V      KG +I R +  TKA+V V  G VGAT
Sbjct: 40  AAEAAAAKRWPGWPGDSVFRLVVPVLKVGSIIGRKGELIKRLVEETKAKVRVLEGPVGAT 99


>08_02_1608 - 28205483-28205851,28206244-28206522
          Length = 215

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 222 FFCGDQQIIHFCSVHKV 272
           +FC +Q   HF ++HKV
Sbjct: 27  YFCHEQGAAHFAAIHKV 43


>08_02_0677 - 19947277-19947342,19948121-19948502,19948573-19948925
          Length = 266

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 131 RDLSRTKAEVTVTSGGVGATNVTLHLKSE 45
           RDL RT   +T+   GVG  ++  HL ++
Sbjct: 148 RDLERTVERMTLEGLGVGEDHIASHLAAQ 176


>03_01_0345 - 2708483-2709346
          Length = 287

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 222 FFCGDQQIIHFCSVHKV 272
           +FC +Q   HF ++HKV
Sbjct: 27  YFCHEQGAAHFAAIHKV 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,513,517
Number of Sequences: 37544
Number of extensions: 160665
Number of successful extensions: 325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)