Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_N23
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 158 3e-40
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 153 1e-38
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.38
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S... 26 2.7
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 2.7
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 3.6
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 4.7
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 4.7
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 4.7
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 158 bits (384), Expect = 3e-40
Identities = 70/98 (71%), Positives = 84/98 (85%)
Frame = -3
Query: 353 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 174
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 173 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 60
+ +PKLY KL YCVSCAIHS+VVR RS++ RRIRTPP
Sbjct: 61 EYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPP 98
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 153 bits (370), Expect = 1e-38
Identities = 67/98 (68%), Positives = 83/98 (84%)
Frame = -3
Query: 353 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 174
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 173 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 60
+ +PK+Y KL YCVSCAIH++VVR RS++ RRIRTPP
Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPP 98
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.38
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = -3
Query: 272 RCVPKDKAIKKFVIRNIVEAAAVRDI 195
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 204
Score = 25.8 bits (54), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 118 STAKLSGTDRRKTEESVLLPRVTSLRDMSRP 26
+T +S DR T + P VTS R+ +RP
Sbjct: 94 TTTGISAHDRALTTRQLANPEVTSPREFNRP 124
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 2.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 92 SKKDRRIRTPPKSNFPKGHVTSTGS 18
SK ++ PP SN P HV+ST +
Sbjct: 99 SKPNQTTAMPPPSNNPSRHVSSTSN 123
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 213 RFYDVPNHELFDGLVLWHAPRAVCASHGFNVTTSMLGASS 332
+ +DV + +L + + L P+A+C + ++ TS++ SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 74 IRTPPKSNFPKGH 36
IRTP KS FPK H
Sbjct: 157 IRTPKKSYFPKDH 169
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 134 CVSCAIHSKVVRNRSKKDRRIRTPPKS 54
C SC+ K N+ + RR++ PKS
Sbjct: 142 CGSCSDSKKPQSNKKHRGRRVKHSPKS 168
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +3
Query: 297 FNVTTSMLGASSITAL---TSHVSNLRSGEQ 380
FN+ TS +SS+T+ +SH+SN + ++
Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISNFTNSQK 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,632,815
Number of Sequences: 5004
Number of extensions: 28548
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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