Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N22
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    78   3e-16
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    26   1.8  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   3.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   3.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   4.3  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    24   5.6  
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   5.6  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    24   5.6  
SPAC1486.08 |||mitochondrial inner membrane protein involved in ...    24   5.6  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    24   7.5  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    24   7.5  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    23   9.8  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 78.2 bits (184), Expect = 3e-16
 Identities = 32/63 (50%), Positives = 50/63 (79%), Gaps = 2/63 (3%)
 Frame = -1

Query: 340 MNLDPSKINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMI 167
           + LDP ++N++GG V++GHP+G SG+RI+  L + L  K  + GVA++CNGGGGASS++I
Sbjct: 333 LGLDPERVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAKIGVAAVCNGGGGASSIVI 392

Query: 166 EKM 158
           E++
Sbjct: 393 ERV 395


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -1

Query: 283 PIGMSGARIVVHLCHALKKGEKGVASICNGGGGASSVMIE 164
           P G+SG  I+V LC A    E    +I   G G +S+ IE
Sbjct: 229 PKGLSGKDIIVSLCGAFNHDEVLNHAIEFYGEGLNSLSIE 268


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 328 PSKINVHGGAVSLGHPIGMSGARIVVHLCHALK 230
           P+ +  + G   L   +  S A + VH+CHA+K
Sbjct: 206 PTTMRSNNGLSILASRLKSSEAPMHVHICHAIK 238


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 198 LQIEATPFSPFFKAWH 245
           L +E +P  PF+K WH
Sbjct: 285 LPLELSPGCPFYKIWH 300


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 278 WYVWSSHCCTSVPCFKKRRKGSC 210
           W+VW+   CT +P  K+    +C
Sbjct: 401 WWVWAESRCTEIPESKRTVFPNC 423


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 276 PIG*PKLTAPPCTLIFDGSK 335
           P+G P   AP  T  +DGSK
Sbjct: 174 PVGSPPYAAPEITQQYDGSK 193


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 275 YVWSSHCCTSVPCFKKRRKG-SCFNL 201
           YV+SS+ CT  P F+    G  C N+
Sbjct: 80  YVYSSNNCTGEPVFQTDSDGIECINV 105


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 340 MNLDPSKINVHGGAVSLGHPIGMSGARIVVHLCHALKKG 224
           +N +P    V     S+GH +G +GA   V+    ++KG
Sbjct: 333 VNRNPEAFPVSSSKGSIGHLLGAAGAIESVYTVLTVQKG 371


>SPAC1486.08 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Cox16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 231 FKAWHRCTTMRAPDIPIG*PKLTA 302
           FK+W+R    ++P I +G P L++
Sbjct: 6   FKSWYRLQAKKSPFIYVGLPFLSS 29


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 311 TWWSCQFGSSNWYVWSSH 258
           +W+SC      W VW S+
Sbjct: 346 SWFSCNHFYPEWKVWESY 363


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 299 CQFGSSNWYVWSSHCC 252
           C FGS+++ VW    C
Sbjct: 533 CSFGSNSFTVWEDRLC 548


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 186 PPPPLQIEATPFSPFFKAWHRCTTMRAPDIPIG 284
           PPPP ++    F P  K +     +  P + +G
Sbjct: 49  PPPPTRLHDRSFKPVSKNYESEGRLTPPPVSMG 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,314,660
Number of Sequences: 5004
Number of extensions: 23250
Number of successful extensions: 57
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)