Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N22
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   2.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   7.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   9.5  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 291 WVIQLVCLELALLYICAML*KKEKRELLQFVMAEVVH 181
           W++ +VCL +A   + + + +++  + L+  M  V+H
Sbjct: 4   WLLLIVCLSIACQDVTSAIHQRKSSKNLEHSM-NVIH 39


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +3

Query: 147 LSTYIFSIITDDAPPPPLQIEATPFS 224
           L++ + + + +D P P   I   PF+
Sbjct: 658 LTSLLLTKVAEDRPLPEFYIGGNPFN 683


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  IFKYLILIY*QFLKTSFIXSLH 80
           +F+Y +LIY  F  +SF    H
Sbjct: 330 VFRYGLLIYDFFKDSSFRIQHH 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,542
Number of Sequences: 438
Number of extensions: 1804
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)