Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_N20
(331 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX641116-1|CAE46054.1| 191|Homo sapiens hypothetical protein pr... 141 4e-34
BC011826-1|AAH11826.1| 540|Homo sapiens CCR4-NOT transcription ... 141 4e-34
BC002597-1|AAH02597.1| 540|Homo sapiens CCR4-NOT transcription ... 141 4e-34
AK000662-1|BAA91313.1| 490|Homo sapiens protein ( Homo sapiens ... 141 4e-34
AF180473-1|AAF29827.1| 540|Homo sapiens Not2p protein. 141 4e-34
BC016474-1|AAH16474.1| 753|Homo sapiens CCR4-NOT transcription ... 55 5e-08
AB014591-1|BAA31666.2| 762|Homo sapiens KIAA0691 protein protein. 55 5e-08
AL137674-1|CAB70869.1| 185|Homo sapiens hypothetical protein pr... 36 0.040
AK074074-1|BAB84900.1| 1731|Homo sapiens FLJ00145 protein protein. 29 2.6
AB046789-1|BAB13395.1| 1140|Homo sapiens KIAA1569 protein protein. 29 2.6
L12111-1|AAA20102.1| 112|Homo sapiens immunoglobulin heavy chai... 28 6.0
AF035042-1|AAD56278.1| 118|Homo sapiens myosin-reactive immunog... 28 8.0
AB067256-1|BAC02294.1| 123|Homo sapiens immunoglobulin heavy ch... 28 8.0
>BX641116-1|CAE46054.1| 191|Homo sapiens hypothetical protein
protein.
Length = 191
Score = 141 bits (342), Expect = 4e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = -3
Query: 308 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 129
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 94 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 153
Query: 128 DAHNWRKVPKEFHLDYSKLEGRPQLP 51
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 154 DCLNWRKVAKEFHLEYDKLEERPHLP 179
>BC011826-1|AAH11826.1| 540|Homo sapiens CCR4-NOT transcription
complex, subunit 2 protein.
Length = 540
Score = 141 bits (342), Expect = 4e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = -3
Query: 308 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 129
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 443 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 502
Query: 128 DAHNWRKVPKEFHLDYSKLEGRPQLP 51
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 503 DCLNWRKVAKEFHLEYDKLEERPHLP 528
>BC002597-1|AAH02597.1| 540|Homo sapiens CCR4-NOT transcription
complex, subunit 2 protein.
Length = 540
Score = 141 bits (342), Expect = 4e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = -3
Query: 308 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 129
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 443 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 502
Query: 128 DAHNWRKVPKEFHLDYSKLEGRPQLP 51
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 503 DCLNWRKVAKEFHLEYDKLEERPHLP 528
>AK000662-1|BAA91313.1| 490|Homo sapiens protein ( Homo sapiens
cDNA FLJ20655 fis, clone KAT01590. ).
Length = 490
Score = 141 bits (342), Expect = 4e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = -3
Query: 308 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 129
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 393 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 452
Query: 128 DAHNWRKVPKEFHLDYSKLEGRPQLP 51
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 453 DCLNWRKVAKEFHLEYDKLEERPHLP 478
>AF180473-1|AAF29827.1| 540|Homo sapiens Not2p protein.
Length = 540
Score = 141 bits (342), Expect = 4e-34
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = -3
Query: 308 LLFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFF 129
LLFYL+Y GDVLQ+ AA EL+NR+WRYH EE+VWI++APGM KT+TYERGTYYFF
Sbjct: 443 LLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFF 502
Query: 128 DAHNWRKVPKEFHLDYSKLEGRPQLP 51
D NWRKV KEFHL+Y KLE RP LP
Sbjct: 503 DCLNWRKVAKEFHLEYDKLEERPHLP 528
>BC016474-1|AAH16474.1| 753|Homo sapiens CCR4-NOT transcription
complex, subunit 3 protein.
Length = 753
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = -3
Query: 305 LFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFD 126
LF++FY G Q AA L + WR+H + +W + + T +E+GTY +FD
Sbjct: 671 LFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTI--TDEFEQGTYIYFD 728
Query: 125 AHNWRKVPKE-FHLDYSKLEGR 63
W + KE F +Y LE R
Sbjct: 729 YEKWGQRKKEGFTFEYRYLEDR 750
>AB014591-1|BAA31666.2| 762|Homo sapiens KIAA0691 protein protein.
Length = 762
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = -3
Query: 305 LFYLFYCFVGDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFD 126
LF++FY G Q AA L + WR+H + +W + + T +E+GTY +FD
Sbjct: 680 LFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTI--TDEFEQGTYIYFD 737
Query: 125 AHNWRKVPKE-FHLDYSKLEGR 63
W + KE F +Y LE R
Sbjct: 738 YEKWGQRKKEGFTFEYRYLEDR 759
>AL137674-1|CAB70869.1| 185|Homo sapiens hypothetical protein
protein.
Length = 185
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -3
Query: 308 LLFYLFYCFVGDVLQIAAAAELY 240
LLFYL+Y GDVLQ+ AA ELY
Sbjct: 153 LLFYLYYMNGGDVLQLLAAVELY 175
>AK074074-1|BAB84900.1| 1731|Homo sapiens FLJ00145 protein protein.
Length = 1731
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = -2
Query: 246 VIQSRMAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRRAQLEKGAERVSFGLQQAGG 67
++ ++ +++GG + T + R + T+HL LL R G ++ F LQ G
Sbjct: 959 ILSNKQFLAWGGVPLGRTQLQKLALRNNSASTTQHLRLLIR-----GQDQDCFQLQNTFG 1013
Query: 66 S-AAVTAPCAHVAHPRRSLYCSL 1
S +T+ C HP+ ++ S+
Sbjct: 1014 SEQRLTSNCEIRIHPKEDIFISV 1036
>AB046789-1|BAB13395.1| 1140|Homo sapiens KIAA1569 protein protein.
Length = 1140
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = -2
Query: 246 VIQSRMAISYGGEGVDLTSARHANGREDFNVRTRHLLLLRRAQLEKGAERVSFGLQQAGG 67
++ ++ +++GG + T + R + T+HL LL R G ++ F LQ G
Sbjct: 367 ILSNKQFLAWGGVPLGRTQLQKLALRNNSASTTQHLRLLIR-----GQDQDCFQLQNTFG 421
Query: 66 S-AAVTAPCAHVAHPRRSLYCSL 1
S +T+ C HP+ ++ S+
Sbjct: 422 SEQRLTSNCEIRIHPKEDIFISV 444
>L12111-1|AAA20102.1| 112|Homo sapiens immunoglobulin heavy chain
protein.
Length = 112
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 278 GDVLQIAAAAELYNREWRYHMEEKVWISQAPGMPMVEKTSTYERGTYYFFDA 123
G L+++ A N + Y W+ QAPG + + TY GT Y+ D+
Sbjct: 15 GGSLRLSCVASGLNVKLNY----MTWVRQAPGKGLEWVSVTYTDGTTYYADS 62
>AF035042-1|AAD56278.1| 118|Homo sapiens myosin-reactive
immunoglobulin heavy chain variable region protein.
Length = 118
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 203 WISQAPGMPMVEKTSTYERGTYYFFDA 123
W+ QAPG + + TY G+ Y+ D+
Sbjct: 36 WVRQAPGKGLESVSVTYSGGSSYYADS 62
>AB067256-1|BAC02294.1| 123|Homo sapiens immunoglobulin heavy chain
VHDJ region protein.
Length = 123
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 206 VWISQAPGMPMVEKTSTYERGTY-YFFDA 123
+W+ QAPG + +S +RGT+ Y+ DA
Sbjct: 35 IWVRQAPGKGLEWVSSISDRGTFLYYGDA 63
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,867,696
Number of Sequences: 237096
Number of extensions: 1210222
Number of successful extensions: 3969
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3967
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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