Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N18
         (740 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009296-1|AAH09296.1|  360|Homo sapiens mitochondrial ribosomal...    96   1e-19
AF321613-1|AAK01406.1|  360|Homo sapiens GIBT protein protein.         96   1e-19
AF226045-1|AAF86945.1|  360|Homo sapiens GK002 protein.                96   1e-19
AB208981-1|BAD92218.1|  195|Homo sapiens mitochondrial ribosomal...    85   3e-16
AK075436-1|BAC11619.1|  218|Homo sapiens protein ( Homo sapiens ...    44   8e-04

>BC009296-1|AAH09296.1|  360|Homo sapiens mitochondrial ribosomal
           protein S22 protein.
          Length = 360

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 55/169 (32%), Positives = 83/169 (49%)
 Frame = -2

Query: 739 YLFTDITFGIAXXXXXXXXRDTDGTLRSCDHDIXKKLNQVYFPITGRXIREPHMFSDEEK 560
           Y+FTDI++ I         R+  GTLR    +   ++ QVYFP  GR I  P +F  EE 
Sbjct: 156 YVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFK-EEN 214

Query: 559 FHNLLDRGEYEFVLDRACIXYEPDEPIFQXITSITYQHVDNNKCYXTLRSTRHFGSMTFY 380
              +  +  +  VL+     +EPD   +  +   TY+ +D    Y  LRSTR+FG M +Y
Sbjct: 215 LRTMYSQDRHVDVLNLCFAQFEPDSTEYIKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWY 274

Query: 379 LTWHQSIDNLMLEIIQSGFIREAVLLAAXRHDVHNDVREGTAAQSLAQE 233
              ++ ID L+++ IQ   I +A  L    H +H D +    A+  A E
Sbjct: 275 FVNNKKIDGLLIDQIQRDLIDDATNLVQLYHVLHPDGQSAQGAKDQAAE 323


>AF321613-1|AAK01406.1|  360|Homo sapiens GIBT protein protein.
          Length = 360

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 55/169 (32%), Positives = 83/169 (49%)
 Frame = -2

Query: 739 YLFTDITFGIAXXXXXXXXRDTDGTLRSCDHDIXKKLNQVYFPITGRXIREPHMFSDEEK 560
           Y+FTDI++ I         R+  GTLR    +   ++ QVYFP  GR I  P +F  EE 
Sbjct: 156 YVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFK-EEN 214

Query: 559 FHNLLDRGEYEFVLDRACIXYEPDEPIFQXITSITYQHVDNNKCYXTLRSTRHFGSMTFY 380
              +  +  +  VL+     +EPD   +  +   TY+ +D    Y  LRSTR+FG M +Y
Sbjct: 215 LRTMYSQDRHVDVLNLCFAQFEPDSTEYIKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWY 274

Query: 379 LTWHQSIDNLMLEIIQSGFIREAVLLAAXRHDVHNDVREGTAAQSLAQE 233
              ++ ID L+++ IQ   I +A  L    H +H D +    A+  A E
Sbjct: 275 FVNNKKIDGLLIDQIQRDLIDDATNLVQLYHVLHPDGQSAQGAKDQAAE 323


>AF226045-1|AAF86945.1|  360|Homo sapiens GK002 protein.
          Length = 360

 Score = 96.3 bits (229), Expect = 1e-19
 Identities = 55/169 (32%), Positives = 83/169 (49%)
 Frame = -2

Query: 739 YLFTDITFGIAXXXXXXXXRDTDGTLRSCDHDIXKKLNQVYFPITGRXIREPHMFSDEEK 560
           Y+FTDI++ I         R+  GTLR    +   ++ QVYFP  GR I  P +F  EE 
Sbjct: 156 YVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFK-EEN 214

Query: 559 FHNLLDRGEYEFVLDRACIXYEPDEPIFQXITSITYQHVDNNKCYXTLRSTRHFGSMTFY 380
              +  +  +  VL+     +EPD   +  +   TY+ +D    Y  LRSTR+FG M +Y
Sbjct: 215 LRTMYSQDRHVDVLNLCFAQFEPDSTEYIKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWY 274

Query: 379 LTWHQSIDNLMLEIIQSGFIREAVLLAAXRHDVHNDVREGTAAQSLAQE 233
              ++ ID L+++ IQ   I +A  L    H +H D +    A+  A E
Sbjct: 275 FVNNKKIDGLLIDQIQRDLIDDATNLVQLYHVLHPDGQSAQGAKDQAAE 323


>AB208981-1|BAD92218.1|  195|Homo sapiens mitochondrial ribosomal
           protein S22 variant protein.
          Length = 195

 Score = 85.0 bits (201), Expect = 3e-16
 Identities = 48/146 (32%), Positives = 72/146 (49%)
 Frame = -2

Query: 670 GTLRSCDHDIXKKLNQVYFPITGRXIREPHMFSDEEKFHNLLDRGEYEFVLDRACIXYEP 491
           GTLR    +   ++ QVYFP  GR I  P +F  EE    +  +  +  VL+     +EP
Sbjct: 14  GTLRKASWEERDRMIQVYFPKEGRKILTPIIFK-EENLRTMYSQDRHVDVLNLCFAQFEP 72

Query: 490 DEPIFQXITSITYQHVDNNKCYXTLRSTRHFGSMTFYLTWHQSIDNLMLEIIQSGFIREA 311
           D   +  +   TY+ +D    Y  LRSTR+FG M +Y   ++ ID L+++ IQ   I +A
Sbjct: 73  DSTEYIKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDA 132

Query: 310 VLLAAXRHDVHNDVREGTAAQSLAQE 233
             L    H +H D +    A+  A E
Sbjct: 133 TNLVQLYHVLHPDGQSAQGAKDQAAE 158


>AK075436-1|BAC11619.1|  218|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0127 fis, clone PLACE1003724, highly similar to
           Mitochondrial 28S ribosomal protein S22. ).
          Length = 218

 Score = 43.6 bits (98), Expect = 8e-04
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = -2

Query: 739 YLFTDITFGIAXXXXXXXXRDTDGTLRSCDHDIXKKLNQVYFPITGRXIREPHMFSDE 566
           Y+FTDI++ I         R+  GTLR    +   ++ QVYFP  GR I  P +F +E
Sbjct: 156 YVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFKEE 213


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,888,372
Number of Sequences: 237096
Number of extensions: 1739240
Number of successful extensions: 6529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6524
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)