Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N16
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    28   1.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   2.3  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    27   2.3  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    26   4.0  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    26   5.3  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   7.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.3  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.3  

>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +2

Query: 98  DLIVLVDCAASGKKIQPSSMPVFFTTAIAPSTTAAGTAIIPFFIQALNTKPD 253
           DL+  ++C     KI P S P +FT   A        A +  F + L+  P+
Sbjct: 536 DLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPE 587


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 348 VGMAVTFTFTTNVAQNIRGKNDKLNYFLGGATSGFVFSAWMKKGIIAVPAAVVLGAI 178
           +GMAV     +  AQ+  G    +N F G     F++S  ++KG   +    V+G+I
Sbjct: 455 IGMAVA----SISAQSSMGMGAFINAFFGSVIEVFLYSVALRKGNAGLVEGSVIGSI 507


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 483 MKTFVTSKYAAVAGLAGASFDVLMFSHPKGFVNTIGRMGYIVGPLVGMAVTFTF 322
           M  F+     + + + G   DV + S+    +NT+  +GYIVG   G  +  TF
Sbjct: 111 MMLFIGKATLSYSTILGLFDDVHITSNQYNNLNTLFYVGYIVGQFPGHYIMQTF 164


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -3

Query: 312 VAQNIR--GKNDKLNYFLGGATSG 247
           VA NI   G N K  +FLGGA++G
Sbjct: 151 VASNIEKLGANPKRGFFLGGASAG 174


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +2

Query: 17  LLFSGWAPSVHPFNSSISLXXVQSCLTDLIVL 112
           L FSGW  +V+P+  +     + +C+  +++L
Sbjct: 387 LPFSGWIGTVNPYTQTPVNAVICNCIISILIL 418


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 32  WAPSV-HPFNSSISLXXVQSCLTDLIVLVDCAAS 130
           W P V HP N+ + +     C+   ++ +DC  S
Sbjct: 217 WVPGVIHPNNARLGILHTLGCVPVDVMPIDCQVS 250


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 161  VFFTTAIAPSTTAAGTAIIPFFIQALNTKP 250
            VFF+  + P+  AAG  I  FFI +    P
Sbjct: 1622 VFFSDVLIPALLAAGAIIPYFFINSQPGNP 1651


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 20  LFSGWAPSVHPFNSSISLXXVQSCLTDLIVLVDCAASGKK 139
           +F G  P  HP  S++SL        DL+ L       KK
Sbjct: 698 VFGGLFPEHHPVLSTVSLFSDNPMYEDLLALTTYLGPAKK 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,617
Number of Sequences: 5004
Number of extensions: 52866
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)