Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_N15
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 2.6
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 27 2.6
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 27 3.5
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 27 3.5
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 26 4.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.6
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p... 26 6.1
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 6.1
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.1
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 8.0
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 8.0
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -3
Query: 507 QWGTDESIFNSILITRSYQQLRQIFAEYEALTGKDIEDSIK 385
QWGTD ++ ++ TR+ +Q++ F + E + ++K
Sbjct: 382 QWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQALK 422
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 273 TNDKTLIRIVVSRSEIDLGDIKQAFLEKYG-KSLETWIADDTKGDFK 136
TN++ ++ ++ E GD+ Y KSL TW+ K DFK
Sbjct: 166 TNNRAELQAIILALENTSGDLTIRSDSNYSIKSLTTWLPKWKKNDFK 212
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 173 RPGSLTIRKETSNACYSPLFRKSIIIRLQMSPATAFSMC 57
RP L S+ CYSP + + L SPA + S C
Sbjct: 100 RPNELFKTSSMSSDCYSPQKSRESLNSLCHSPAPSVSSC 138
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 231 EIDLGDIKQAFLEKYGKSLETWIADDTKGD 142
+I L + F E ++L TW DD KG+
Sbjct: 97 QICLNGCRLGFYEPIRRTLNTWFLDDPKGN 126
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = -1
Query: 584 IAMKTRASMKAQLKPMLKHWPPLVKVNGEPTNQSSTPSLSLAPISS*DRSSPSTKL*PEK 405
+ K+ + Q +H+ +V+ N +QSS + + + +P K P
Sbjct: 244 VVFKSLIKSREQKVKQFEHFQQIVQSNSNNPDQSSRSDPNFVEATPVVQQTPELKPSPNT 303
Query: 404 TLRTRS 387
T+RT S
Sbjct: 304 TIRTSS 309
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 146 PFVSSAIQVSRDLPYFSRNACLMSPRSISERLTTM 250
PF +++S +LPY + + +P+S E TT+
Sbjct: 139 PFFDLVLELSTNLPYLIPSIFVENPKSNEEENTTL 173
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 682 ILRTTVRQEPGIGLKRRHVG 623
++ T + +PG LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190
>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 193 LEECLLDVP*VDLGAAHHDADERLVVGADALHRVVQALSEET 318
LEE L+ L A+ +D D+ + ++ V+ AL++ET
Sbjct: 10 LEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKET 51
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 203 ACLMSPRSISERLTTMRMSVLSLVPMPFIE*YRRSAKKPTLLFTHLAIASMPF 361
A L R+I + T++ ++V L+P+P + + AK + +H+ +PF
Sbjct: 102 AILKEKRNILQDKTSVNVNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPF 154
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = -2
Query: 691 HIRILRTTVRQEPGIGLKR-----RHVGTLQEIVRVVVHGQSR 578
H++ ++ V QE G L R LQE+VRVV+H R
Sbjct: 325 HLQSIKAQVEQERGSRLGRLQELRNSFQQLQELVRVVLHENGR 367
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -3
Query: 462 RSYQQLRQIFAEYEALTGKDIEDSIKKEFSGSIEKGMLAIAKCVKSKVGFFAERLYYSMK 283
+SY QLR+ E D D I + + + G +A+ C+ S F LY +MK
Sbjct: 249 QSYVQLRKPLLENNLPYEIDGFDKILQCANSEADIGWIAMIHCIGSNGYAFPIHLYLNMK 308
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 137 LKSPFVSSAIQVSRDLPYFSRNACLMSPRS 226
+ SP S +Q+S ++P +A M PRS
Sbjct: 438 VSSPMSESHVQISSEMPRTGMSALPMRPRS 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,849
Number of Sequences: 5004
Number of extensions: 52127
Number of successful extensions: 156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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