Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N14
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...   204   1e-53
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    55   1e-08
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        30   0.40 
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   2.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    26   5.0  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    26   6.6  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   8.7  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score =  204 bits (498), Expect = 1e-53
 Identities = 98/160 (61%), Positives = 116/160 (72%)
 Frame = -1

Query: 751 IYAIGDVIHGPMXAHKAEDEGIVCVEGIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEEDL 572
           I  IGD   GPM AHKAEDEGI  VE I     H NY+ IP+V+YT PEV WVG TE+  
Sbjct: 352 IRVIGDATLGPMLAHKAEDEGIAAVEYIAKGQGHVNYNCIPAVMYTHPEVAWVGITEQKA 411

Query: 571 KKEGRAYKVGKFPFLANSRAKTNGETEGFVKVLSDKTTDVILGTHIIGPGGGELINEAVL 392
           K+ G  Y++G FPF ANSRAKTN + +G VKV+ D  TD +LG H+IGP  GELI EA L
Sbjct: 412 KESGIKYRIGTFPFSANSRAKTNMDADGLVKVIVDAETDRLLGVHMIGPMAGELIGEATL 471

Query: 391 AQEYGAAAEDVARVCHAHPTCAEALREANLAAYSGKPINF 272
           A EYGA+AEDVARVCHAHPT +EA +EA +AA+ GK I+F
Sbjct: 472 ALEYGASAEDVARVCHAHPTLSEATKEAMMAAWCGKSIHF 511


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
 Frame = -1

Query: 673 GIKGMPVHFNYDAIPSVIYTSPEVGWVGKTEED-LKKEGRA-YKV--GKFPFLANSRAKT 506
           GIK    H +Y+ +PSV++  PE G +G TE++ + K G +  KV   KF  L  S  + 
Sbjct: 340 GIKD--AHLDYEEVPSVVFAHPEAGTIGLTEQEAIDKYGESQIKVYNTKFNGLNYSMVEQ 397

Query: 505 NGETEGFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCA 326
             +     K++       ++G H++G    E++    +A + GA   D       HPT A
Sbjct: 398 EDKVPTTYKLVCAGPLQKVVGLHLVGDFSAEILQGFGVAIKMGATKSDFDSCVAIHPTSA 457

Query: 325 EAL 317
           E L
Sbjct: 458 EEL 460


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = -1

Query: 640 DAIPSVIY-TSPE----VGWVGKTEEDLKKEGR-AYKVGKFPFLANSRAKTNGETEGFVK 479
           DA P+++  T P     V WV KT  +    G  +    K PF A+SRA +   T     
Sbjct: 85  DAFPTLLSKTGPSKPRIVSWVRKTASNTSVAGSDSVSRDKIPFSASSRASSTKST----- 139

Query: 478 VLSDKTTDVILGTHIIGP 425
           + S K TD +  T I+ P
Sbjct: 140 LSSVKETDFVTETLILSP 157


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +3

Query: 531 NGNLPTL*ALPSFFKSSSVFPT 596
           NGN PTL    SFF S+SV PT
Sbjct: 289 NGNSPTLKNDSSFFGSASVRPT 310


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -3

Query: 329  CRSAA*SKSSSVLRKTYQLLNVEVQII 249
            C SA  SKSS +L KT Q L+  V II
Sbjct: 1262 CTSALDSKSSLLLEKTIQNLSCTVLII 1288


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 549 KWVNSRSWRTPERRRMGKLKVS 484
           KW+++R  R    RR+G+L +S
Sbjct: 46  KWISNRIHRIRRSRRLGRLSIS 67


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 641 VVEVDGHALNTFD 679
           +V VDGH +NTFD
Sbjct: 920 IVAVDGHDINTFD 932


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,628
Number of Sequences: 5004
Number of extensions: 61363
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)