Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N12
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.27 
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   4.4  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   5.8  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   5.8  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 314  LKNYIPFIFFVFKIFLDVKSCLPIFYQMVLVNTNETARYLNN-KLKENNVQHQINYNPLL 490
            + N+ PF+       L+VK+ LPI   + +++ ++   +++N  + E    H IN + +L
Sbjct: 2027 ISNHYPFMHITISALLEVKNLLPIDLNIRIIDKDQEGVWMSNVGIGECAYVHSINISHVL 2086


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 555 DVFRLKNYSMKEFEERINKI 614
           +V RLKN   KE EE++N++
Sbjct: 393 EVNRLKNLKRKELEEKLNQV 412


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 350 KIFLDVKSCLPIFYQMVLVNTNETARYLNNKLKENNVQHQIN 475
           +I L V    P       +     A+Y N K+K +N+   +N
Sbjct: 423 EIVLQVLESFPAAVSFSTITNTIQAKYSNRKIKNSNITRSLN 464


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 401 LVNTNETARYLNNKLKENNVQHQINYNPLLQIYF 502
           L +   + RYL + LK+NN Q  I+ NPLL   F
Sbjct: 792 LEDIQNSHRYLCS-LKKNNSQKDIHRNPLLSHVF 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,204
Number of Sequences: 5004
Number of extensions: 45233
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)