Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N12
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.2  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 407 NTNETARYLNNKLKENNVQHQINYN 481
           N N    Y NN    NN   ++ YN
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +2

Query: 407 NTNETARYLNNKLKENNVQHQINYN 481
           N N    Y NN    NN   ++ YN
Sbjct: 91  NNNYKYNYNNNNYNNNNYNKKLYYN 115


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 407 NTNETARYLNNKLKENNVQHQINYNPLLQIYFQFI 511
           N N    Y NN    NN  +  N N   ++Y+  I
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYN-NNCKKLYYNII 359


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 419 TARYLNNKLKENNVQHQ 469
           TA ++ ++  ENNVQ+Q
Sbjct: 278 TAPFMKSQFGENNVQYQ 294


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +2

Query: 416 ETARYLNNKLKENNVQHQ 469
           +T ++ N + +ENNVQ++
Sbjct: 282 DTEQFSNPQYEENNVQYE 299


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 550  SSIKRIFLNISSCNKLKINLQKRVIINLMLDIV 452
            S IK    ++   NK+    QK V+++++LD V
Sbjct: 1305 SIIKDCVEDMKRGNKILRTCQKAVVLSMLLDEV 1337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,712
Number of Sequences: 438
Number of extensions: 3690
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)