Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_N06
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580... 62 6e-10
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 31 0.75
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 30 2.3
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 29 3.0
01_01_0231 + 1951047-1951499 29 3.0
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 29 3.0
01_01_0229 - 1943473-1943922 29 3.0
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317... 28 7.0
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 28 9.3
>03_06_0724 -
35757228-35757323,35757837-35757893,35757983-35758075,
35758271-35758336,35758444-35758653,35758750-35759022,
35759112-35759251,35759330-35759471
Length = 358
Score = 61.7 bits (143), Expect = 6e-10
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 4/156 (2%)
Frame = -2
Query: 748 QADFEGRNPEDSDFHGIKQLLRQLFLKSNVDLGGLAQIIISQNYIGSVVK----QCLXXX 581
QADF +P+ DFHG+K LL+ DL G +I+ Q +G+VVK +
Sbjct: 99 QADFAFYDPKPGDFHGVKLLLKTYLDSKPWDLTGFVDLILEQTTVGTVVKIADDEEDGEG 158
Query: 580 XXXXXXXXXXXXGVFGVTTVVNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILA 401
+FG+ +V+N+ + + +++ L + D TK+ +K +L
Sbjct: 159 NGADGSSTGGNDDLFGLISVLNLGRYSEHRCMKDLKDYLLAVC---GDKDTKKKLKQMLG 215
Query: 400 DDSQHTGLVINERILNIPAAISVPLFASLQTELEKA 293
D + GL++ R +N P + ++ SL E+ A
Sbjct: 216 DKAPDVGLLVCRRFVNFPYELVPKMYESLFDEVSWA 251
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 31.5 bits (68), Expect = 0.75
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 408 IYLINSLVLG-SAFS*DSFVSNSLICATLGSFFL 506
+ + +SLVL SA S D + NSLIC +LG FFL
Sbjct: 524 VLMASSLVLFLSAVSPDFVLGNSLICMSLGVFFL 557
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -2
Query: 520 VNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPA 344
+NI + + SV+ I + L LS+ K+L++ ADD+ G NE PA
Sbjct: 689 ININDQSKQASVSLILDSLKDLSEAELSTIRKQLLEEFSADDACPLGSHSNESTSQSPA 747
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 600 FTTLPM*FCDIIIWASPPRST-FDFRNSCLSSCLIPWKS 713
F L + I W P R FD N+ LS L PWKS
Sbjct: 685 FDRLERKYNKISAWPRPERRLLFDLANTVLSEILAPWKS 723
>01_01_0231 + 1951047-1951499
Length = 150
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 507 KEKMNPVWHRSENCLQNYLRRMQIPE 430
KE N WHR E ++RR ++PE
Sbjct: 88 KEDKNDKWHRVERSSGQFMRRFRLPE 113
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 507 KEKMNPVWHRSENCLQNYLRRMQIPE 430
KE N WHR E ++RR ++PE
Sbjct: 88 KEDKNDKWHRVERSSGQFMRRFRLPE 113
>01_01_0229 - 1943473-1943922
Length = 149
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 507 KEKMNPVWHRSENCLQNYLRRMQIPE 430
KE N WHR E ++RR ++PE
Sbjct: 87 KEDKNDKWHRVERSSGQFMRRFRLPE 112
>01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,
3179892-3179999
Length = 957
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 315 YRLNLRKLIGKICYTTLNTLFGSVKLTLLESHQKCFLQIK 196
+ +NLR+ +G + T F + +++ E CF +IK
Sbjct: 901 FDINLRRQLGALSSKTFEVFFKLINISISEDETVCFNRIK 940
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = -2
Query: 508 KRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPAAISVP 329
+R+ EPS LTK S + K++IK +L+D+ G+ ++ I A V
Sbjct: 162 ERRREPSPLTPTSCLTKCSLHGRERDKKQVIKLLLSDEYNCQGVY---SVVPIVGAAGVG 218
Query: 328 LFASLQTELEKAHRKNMLYNFKYLIWISKTY 236
SL + ++ K +W+ + +
Sbjct: 219 K-TSLVQHIYNDEALRSKFDMKMWVWVCQEF 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,910,798
Number of Sequences: 37544
Number of extensions: 260345
Number of successful extensions: 608
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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