Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N05
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...   128   9e-31
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    30   0.33 
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   2.4  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    27   4.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   7.2  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   9.5  

>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score =  128 bits (309), Expect = 9e-31
 Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 12/239 (5%)
 Frame = -1

Query: 791 ILLMIPVTSFTLGSWQVYRWQWKLGLIDMMQAKSNAVPIDMPKDFSELE--KMEYLPVKV 618
           +L  +P+ +F LG+WQV R +WK+G+I+ +  +     I +PK  +E +  K+E+  V +
Sbjct: 42  LLSAVPIVTFALGTWQVKRREWKMGIINTLTERLQQPAILLPKTVTEQDTKKLEWTRVLL 101

Query: 617 KGEFLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQ-GWLVITPFKLADTGEVILINR 441
           +G F H++E+L+GPR                   K+ Q G+ V+TPF L D G  IL+NR
Sbjct: 102 RGVFCHDQEMLVGPRT------------------KEGQPGYHVVTPFIL-DDGRRILVNR 142

Query: 440 GWIHQNLRPKEKREPS-LIKGPVELTGVVRLTEKRAPFMPKNNPEKGSWFYRDLDQMSAH 264
           GWI ++   +  R+PS L KGPV + G++R    +  FM KN PEK S+++ ++ + +  
Sbjct: 143 GWIARSFAEQSSRDPSSLPKGPVVIEGLLRQHTDKPRFMMKNEPEKNSFYFLNVREFAQL 202

Query: 263 IGCLPIWLDAKGIPDPP--------TGWPIPNQTRVTLRNEHFSYIVTWYXLFAXTRXM 111
            G LPI +        P         G P+ +  +V + N H  YI+TWY L   +  M
Sbjct: 203 KGTLPILITELQPSLTPLQEADHVKRGLPLGHPLKVEIFNSHTEYIITWYSLSVVSAIM 261


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 527 VSDP--KKNQGWLVITPFKLADTGEVILINRGWIHQNLRPKEKREPSLIKGPVEL 369
           V++P   K+ GW+ +  +   DT +   + R +    + PK  R   L+K PV++
Sbjct: 510 VNEPIYSKSDGWIPVMVYPFIDTKQTPFMGRAFAVPFIEPKWGRYEILVKKPVKI 564


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 293 YRDLDQMSAHIGC-LPIWLDAKGIPDPPTGWPIPNQT 186
           Y+D D  ++HIGC  P +   K I + P  +  PN T
Sbjct: 573 YQDPDDTNSHIGCDPPGYPTTKYIEEHPLAYKNPNAT 609


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 508 FFFGSDTSEPTLLVIELSSMSALGPINISFSCKNS-PFTFTGKYSIFSNSEKS 663
           F F + T EPT    +L+ + A+   N+    KNS P+    + + F+N   S
Sbjct: 218 FMFSAPTKEPTKHPRDLTMIVAVSSPNLGIGKKNSMPWHIKQEMAYFANVTSS 270


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 457 TSPVSANLNGVITNHPWFFFGSDTSEPTLLVIELSSMSALGPIN 588
           TSP  AN N     +   FFGS +  PT+  I  S   +L  I+
Sbjct: 283 TSPAFANGNSPTLKNDSSFFGSASVRPTVSPIGTSFRQSLPDIS 326


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 22/92 (23%), Positives = 40/92 (43%)
 Frame = +1

Query: 433 IQPLFIKMTSPVSANLNGVITNHPWFFFGSDTSEPTLLVIELSSMSALGPINISFSCKNS 612
           +QPL   MT PV +++    T +    +G D++  T         + L P     +  N 
Sbjct: 294 LQPLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQNPLQPARTGPAAIN- 352

Query: 613 PFTFTGKYSIFSNSEKSFGMSIGTALDLACIM 708
            + +T  YS+ S S  +    +G++   A +M
Sbjct: 353 -YNYTTNYSVSSPSVTNPFFDVGSSTQNASLM 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,590
Number of Sequences: 5004
Number of extensions: 65472
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)