Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N05
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0045 - 5251234-5251305,5251362-5251419,5252256-5252539,525...    58   8e-09
07_03_0846 - 21983581-21986055                                         31   1.1  
06_03_1143 + 27971561-27972670,27973868-27974458                       29   3.3  
05_01_0333 - 2614123-2614202,2614466-2614553,2614644-2614721,261...    29   3.3  
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    29   5.7  
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320...    28   7.6  
01_01_0370 + 2895685-2895717,2895892-2896944                           28   7.6  

>03_02_0045 -
           5251234-5251305,5251362-5251419,5252256-5252539,
           5252836-5253019,5253564-5253814,5253921-5254024,
           5254143-5254281
          Length = 363

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
 Frame = -1

Query: 389 IKGPVELTGVVRLTEKRAPFMPKNNPEKGSWFYRDLDQMSAHIGCLP---IWL-DAKGIP 222
           +K PV + GV+R +EK + F+P N P  G WFY D+  ++   G LP   I++ D     
Sbjct: 231 VKPPVRVLGVIRGSEKPSIFVPANEPSVGQWFYVDVPMIARACG-LPENTIYIEDINEDV 289

Query: 221 DPPTGWPIPNQTRVTLR-----NEHFSYIVTWYXLFAXTRXM 111
            P   +P+P      +      ++H  Y VTWY L A    M
Sbjct: 290 SPTNPYPVPKDVSTLIHHSVMPHDHLKYTVTWYTLSAAVTFM 331



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 7/130 (5%)
 Frame = -1

Query: 767 SFTLGSWQVYRWQWKLGLIDMMQAKSNAVPID----MPKDFS---ELEKMEYLPVKVKGE 609
           +F LGSWQ++R Q K+ ++D    +    PI      P D S   +    E+  +  +G+
Sbjct: 67  TFGLGSWQLFRRQEKIEMLDYRTRRLEMEPIAWNQMAPSDLSAGVDPATPEFRRIVCEGD 126

Query: 608 FLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQGWLVITPFKLADTGEVILINRGWIH 429
           F  E+ + +GPR+    S +T   G  V  P      L+  P +   +   IL+NRGW+ 
Sbjct: 127 FDEERSVFVGPRSR-SISGVTEN-GYYVVTP------LIPRPSEHGSSWPPILVNRGWVP 178

Query: 428 QNLRPKEKRE 399
           ++ R K  ++
Sbjct: 179 RDWRDKNVQD 188


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +1

Query: 307 FSGLFLGMKGALFSVNLTTPVSSTGPFIKDGSRFSLG 417
           FS +FL    A+ ++N TTP+S T   +  G RF+LG
Sbjct: 10  FSQIFLCT--AVDTINSTTPLSGTQKIVSKGGRFALG 44


>06_03_1143 + 27971561-27972670,27973868-27974458
          Length = 566

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 236 AKGIPDPPTGWP-IPNQTRVTLRNEHFSYIV 147
           A G+P  P GWP + N  +V L+   F Y+V
Sbjct: 30  ADGLPPGPPGWPVVGNLFQVILQRRPFMYVV 60


>05_01_0333 -
           2614123-2614202,2614466-2614553,2614644-2614721,
           2614795-2614887,2614982-2615101,2615685-2615726,
           2615822-2616091,2617188-2617339,2617771-2618233
          Length = 461

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 313 GLFLGMKGALFSVNLTTPVSSTGPFIKDGS 402
           GLF    GA  ++NLTT VS  G  +K GS
Sbjct: 408 GLFHIRNGARNTINLTTVVSENGEVVKRGS 437


>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 731 QWKLGLIDMMQAKSNAVPIDMPKDFSELEKMEYLP 627
           Q+K G  D     +N V ID+  DF E+E++  LP
Sbjct: 438 QFKNGNADEKNLVNNPVVIDLMDDFLEMERLAALP 472


>01_01_0424 +
           3200223-3200634,3200677-3200836,3200987-3201342,
           3201958-3203252
          Length = 740

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 553 ELSSMSALGPINISFSCKNSPFTFTGKYSIFSNS 654
           EL+S+  LG +N+S++        +  +S+FSNS
Sbjct: 635 ELASLDFLGTLNLSYNMLEGKIPESPHFSLFSNS 668


>01_01_0370 + 2895685-2895717,2895892-2896944
          Length = 361

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/75 (28%), Positives = 39/75 (52%)
 Frame = -1

Query: 632 LPVKVKGEFLHEKEILIGPRALIEESSITNRVGSLVSDPKKNQGWLVITPFKLADTGEVI 453
           L V   G+ L+++  ++G  A ++E     +   LV       G+ VI P+   +T EVI
Sbjct: 292 LVVASGGDVLYDR--VVGYAARLKEMG---KAVELVEFEGAQHGFSVIQPWS-PETSEVI 345

Query: 452 LINRGWIHQNLRPKE 408
            + + ++H+ +RP E
Sbjct: 346 QVLKRFVHKAIRPAE 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,794,242
Number of Sequences: 37544
Number of extensions: 410127
Number of successful extensions: 1252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)