Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N04
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    29   0.84 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   2.6  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   5.9  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   7.8  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    25   7.8  

>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 261 IAEQCIALECLYENDLIYR 205
           IAE  +ALECL+E ++IYR
Sbjct: 334 IAELLVALECLHEFNVIYR 352


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = -1

Query: 532 LLLYNEIGLSFHRYLTNYPCLNYMVISEQSDFNVV*KSTYKLIFVNFHCIFHFTVQVHLF 353
           ++++ +I +S     +++PCL   VIS++    +    T  ++  N   I H   Q  L+
Sbjct: 432 IIIHPKILMSATAVASSFPCLRKAVISDR--VGIYGPPTKAMVTGN---ILHDFFQHALY 486

Query: 352 VDVSALHNLD-KLITYIEYYV 293
             + AL N+D  L T I+ Y+
Sbjct: 487 RGIDALENVDINLETSIKTYI 507


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -2

Query: 261 IAEQCIALECLYENDLIYR 205
           IAE  +ALE L+++D+IYR
Sbjct: 409 IAELVLALEHLHKHDIIYR 427


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 619 SYMYVNYRSIFTVSVL-SSYLRKIYHANKELLLYNEIGLSFHRYLTNYPCLN 467
           ++++     +F +SV+ S+ +R    + K+  +Y E    F RY+ +  C+N
Sbjct: 302 NFLFFYEMGLFNISVIYSNRIRMSRCSQKDAQIYQEWYSFFPRYVYSTNCMN 353


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 535 ELLLYNEIGLSFHRYLTNYPCLNYMVISEQ 446
           E  ++N I   FH  ++ + C NY  + EQ
Sbjct: 214 EKRMFNRIISGFHASISTHVCQNYYDVEEQ 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,929
Number of Sequences: 5004
Number of extensions: 50646
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)