Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N04
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1289 - 35470076-35470243,35471032-35471108,35471935-354719...    34   0.12 
07_01_0156 + 1106058-1107596                                           31   0.65 
06_03_0784 - 24557089-24557198,24557296-24560725                       29   2.6  
03_05_0382 + 23649597-23649645,23649675-23649735,23650784-236509...    29   3.5  

>02_05_1289 -
           35470076-35470243,35471032-35471108,35471935-35471971,
           35472559-35472618,35472693-35472769,35473244-35473364,
           35473505-35473597,35473708-35473770,35475195-35475245,
           35475384-35475511,35476249-35476343,35476345-35476427,
           35476653-35476808,35477046-35477182,35477243-35477252,
           35477291-35477380,35477771-35478070,35479054-35479120,
           35479382-35479469,35480317-35480373,35480469-35480592
          Length = 693

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -1

Query: 586 TVSVLSSYLRKIYHANKELLLYNEIGLSFHRYLTNYPC 473
           TV+  S  +  I   + +++ +N + LSF R++TN+PC
Sbjct: 567 TVARTSIDINLISKDSSKVIFFNNVNLSFFRFITNFPC 604


>07_01_0156 + 1106058-1107596
          Length = 512

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -1

Query: 535 ELLLYNEIGLSFHRYLTNYPCLNYMVISEQSDFNVV*KSTYKLIFVNFHCIFHFTVQVHL 356
           E L + E G + H+YL   P +  ++  +  ++ +V ++ Y+L  +   CI    ++  L
Sbjct: 142 EFLRFVEFGGTPHQYLFFDPLIRQLLAGKTLEYKLVSENKYRLFVIRPFCISENRIEARL 201

Query: 355 FVD 347
             D
Sbjct: 202 IFD 204


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 397 NFHCIFHFTVQVHLFVDVSALHNLDKL 317
           N  CIFH  V   LFVD++++ N+  L
Sbjct: 664 NLSCIFHIDVHKDLFVDLASVGNMPYL 690


>03_05_0382 +
           23649597-23649645,23649675-23649735,23650784-23650937,
           23651019-23651149,23651239-23651315,23651439-23651477,
           23651976-23652067,23652140-23652277,23652385-23652549
          Length = 301

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 285 EHYT*YSIYVISLSKLCNADTSTNKCTCTVKWNIQ*KFT 401
           E  T   I  I + K C   TS+  C C + WN+  K +
Sbjct: 52  EDETHEGIKTIRIQKACEFTTSSVLCVCIITWNMNGKMS 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,997
Number of Sequences: 37544
Number of extensions: 242703
Number of successful extensions: 374
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)