Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N04
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine re...    29   2.4  
AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine re...    29   2.4  
U80455-6|AAB37884.1|  159|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC006679-5|AAK84468.2|  388|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF016414-4|AAG24021.2|  230|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform a protein.
          Length = 230

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 406 IFVN--FHCIFHFTVQVHLFVDVSALHNLDKLITYIEYYV 293
           IFV   FHC+  F V VH+FV    L    K +  +++Y+
Sbjct: 16  IFVTMAFHCLTIFEVPVHIFVGYLILFKTPKRMGNVKWYM 55


>AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform b protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 406 IFVN--FHCIFHFTVQVHLFVDVSALHNLDKLITYIEYYV 293
           IFV   FHC+  F V VH+FV    L    K +  +++Y+
Sbjct: 16  IFVTMAFHCLTIFEVPVHIFVGYLILFKTPKRMGNVKWYM 55


>U80455-6|AAB37884.1|  159|Caenorhabditis elegans Hypothetical
           protein T01D1.4 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 138 CYYDVNCYMLNVIRIALGKHFKIVIESEILHQRTTTMYPFNKYNK 4
           CYYDV     + IR+ + K   IVI   + H+ TTT   F K  +
Sbjct: 104 CYYDVEPEDDSWIRVQVEKGDLIVIPKGLSHRFTTTPQNFVKIQR 148


>AF125960-2|AAD14736.1|  478|Caenorhabditis elegans Hypothetical
           protein T12B3.2 protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 621 FHICM*IIVLYSRFLYSRHIYGKYTTRIKSFYC 523
           FHIC  I   ++ F   ++I+G Y+  +  + C
Sbjct: 8   FHICAFITWQFANFFAGQNIFGIYSNNVSKWKC 40


>AC006679-5|AAK84468.2|  388|Caenorhabditis elegans Hypothetical
           protein R13A5.7 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 541 NKELLLYNEIGLSFHRYLTNYPCLNYMVISEQSDFNV 431
           N EL+L N  G     Y+T+Y  LN+ VI++  + +V
Sbjct: 305 NSELILKNFDGKRAKLYVTSYGGLNFQVITKNFEGHV 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,679
Number of Sequences: 27780
Number of extensions: 273401
Number of successful extensions: 593
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)