Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N02
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0272 + 22604458-22604877                                         30   1.6  
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779...    29   2.2  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    28   6.7  

>03_05_0272 + 22604458-22604877
          Length = 139

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -2

Query: 604 PRLRTQPHPAPPEGDHG 554
           PR R QP PAP EG HG
Sbjct: 101 PRPREQPQPAPREGRHG 117


>03_02_0359 -
           7788382-7788522,7788931-7789837,7791227-7791337,
           7791437-7791507,7791582-7791659,7792564-7792770,
           7792867-7793046,7793249-7793471,7794133-7794453,
           7794538-7795109
          Length = 936

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 334 SKIISVSYKNINFIMYCLQIRSHTLDLFTFVSPDVLIADLE 456
           S +I  +Y  INF+ + +Q+RS TL++  F    + I DLE
Sbjct: 159 SMVILTTYGLINFLKFFVQLRS-TLNIRDFYCNSLKITDLE 198


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 600 GSGPNRTQRHRKAITVHFASSACEYVDVRGSVQERLAADVQAAATRR 460
           G G +  +  R        SS   Y D++ SVQ   AA V+   TRR
Sbjct: 636 GGGDHEPEEERGTRLAVIGSSHASY-DIQDSVQHSSAASVETTTTRR 681


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,079,588
Number of Sequences: 37544
Number of extensions: 242331
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)