Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_N02
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 83  LQLWRLDGALIEKVINRVH 27
           L  WR DG  ++K +N V+
Sbjct: 229 LSQWRKDGGTVKKKVNYVY 247


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 534 CEYVDVRGSVQERLAADVQAAATRRGL 454
           CE+++  GSV++R+A  +   A  +GL
Sbjct: 68  CEFLNPGGSVKDRIAYRMIQDAEDKGL 94


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 313 SFNTTS*SKIISVSYKNINFIMYCL 387
           SF TTS + +     +  NF  YCL
Sbjct: 126 SFATTSTTIVSGAMAERCNFKAYCL 150


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 187 YYSAIYPPQ 213
           +YSA YPPQ
Sbjct: 22  FYSASYPPQ 30


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 455 SKSAIRTSGDTKVNKSRV*DRI 390
           SKS I+ +  T+V+ S+  DR+
Sbjct: 561 SKSFIKANSQTEVSNSKKLDRL 582


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,182
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)