Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_M24
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 52 9e-08
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 39 7e-04
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 38 0.001
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 38 0.002
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 38 0.002
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 38 0.002
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 37 0.004
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 36 0.005
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 35 0.014
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 34 0.025
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 33 0.058
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 31 0.13
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 31 0.18
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 31 0.23
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 31 0.23
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 31 0.23
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 30 0.31
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 30 0.31
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 30 0.41
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 0.54
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 29 0.95
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 29 0.95
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 29 0.95
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 28 1.3
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 28 1.7
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 27 2.2
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 2.2
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 2.9
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 2.9
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 27 3.8
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 27 3.8
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 27 3.8
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 5.0
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 6.7
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 8.8
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 8.8
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 52.0 bits (119), Expect = 9e-08
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = -1
Query: 502 KNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLW 323
K+ G ++ RSD K+ + GWDG R++S ++ PL VL H I +A+
Sbjct: 295 KHCGQQNIRIRSDNKILATAGWDGRGRVYSCQTLAPLAVLKYHSDGINSLAFHP------ 348
Query: 322 KAYIMAAGGLDGAITLWDLY 263
+ ++A D I+LW LY
Sbjct: 349 GSNVIALASKDTRISLWKLY 368
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 39.1 bits (87), Expect = 7e-04
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = -1
Query: 493 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 314
GI + + DG + +SGG D RI+ S + ++VL EH + I +A+S Y
Sbjct: 309 GIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSP------NGY 362
Query: 313 IMAAGGLDGAITLWDL 266
+A D + +WDL
Sbjct: 363 QLATSSADDTVKIWDL 378
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = -1
Query: 466 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 287
+GK SG D IRIF S + L +L H+ I+ V ++ EK+ +GG DG
Sbjct: 398 NGKFIVSGSSDLTIRIFEASSGKLLRMLQGHEDLIRTVRFNDEKI--------VSGGYDG 449
Query: 286 AITLWDLYNSKQ 251
+ +W+ +Q
Sbjct: 450 TVRIWNFNTGEQ 461
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 37.9 bits (84), Expect = 0.002
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -1
Query: 493 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTE-HKQAIQDVAYSTEKVSLWKA 317
G+ V DGK GG D + I+S F +R LV + HK + DV + +
Sbjct: 366 GLTCVTWSPDGKFIAIGGKDDLVSIYS-FPLRKLVARCQGHKSWVTDVIFDAWRCD-DDN 423
Query: 316 YIMAAGGLDGAITLWD 269
Y +A+ GLD + LWD
Sbjct: 424 YRIASVGLDRKLLLWD 439
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/75 (25%), Positives = 39/75 (52%)
Frame = -1
Query: 490 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 311
++ ++ SDG+ +G DG I+++ S +V T+H A+ + +S + +
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSK------RGNV 395
Query: 310 MAAGGLDGAITLWDL 266
+ + LDG++ WDL
Sbjct: 396 LFSSSLDGSVRAWDL 410
Score = 34.3 bits (75), Expect = 0.019
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = -1
Query: 490 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 311
++ + S G + SG WD +RI+ FS +V + +A+ +
Sbjct: 470 VSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKE------ 523
Query: 310 MAAGGLDGAITLWDLYNSKQ 251
+ LDG +T W++ KQ
Sbjct: 524 VCVASLDGQLTFWNVQEGKQ 543
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 0.002
Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Frame = -1
Query: 607 LEQQRGIIGNASNVIQIFNLGRXXXXXXXXXDVTIKNPGINKV---KTRSDGKVFTSGGW 437
LE R ++G + I ++++ TI N +V DG F SGG
Sbjct: 283 LETNRLLVGKGNGNIFVYDIIWSESTSKAVLVATITNAHDEQVCGLTWNHDGSQFASGGN 342
Query: 436 DGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNS 257
D + +F +R + + + A++ +++ + SL AG D I ++ +N
Sbjct: 343 DNRVCLFKGSDLRQPLYVWQQNAAVKALSFCPWQRSL---LATGAGSHDKHIRFYNCFNG 399
Query: 256 KQ*NDQIMLYCDLQVMICH 200
K+ ++ LYC Q+ H
Sbjct: 400 KKIDE---LYCGAQITSIH 415
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 36.7 bits (81), Expect = 0.004
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -1
Query: 472 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG- 296
RSDG SGG D ++I+ S P T H A++ VA+ W++ ++A GG
Sbjct: 313 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-----WQSNLLATGGG 367
Query: 295 -LDGAITLWD 269
+D I W+
Sbjct: 368 TMDKQIHFWN 377
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 36.3 bits (80), Expect = 0.005
Identities = 35/209 (16%), Positives = 78/209 (37%), Gaps = 2/209 (0%)
Frame = -1
Query: 748 KFIEFPCDRPCLLAGYEAGWLLLWDLNTNKCISKLQVLECPM-SVDYHLEQQRGIIGNAS 572
K + F +P +L G + LWD + + + P+ + +H Q + G
Sbjct: 15 KGVAFHPTQPWILTSLHNGRIQLWDYRMGTLLDRFDGHDGPVRGIAFHPTQPLFVSGGDD 74
Query: 571 NVIQIFNLGRXXXXXXXXXDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPL 392
+ ++N + + + S D IRI++W S +
Sbjct: 75 YKVNVWNYKSRKLLFSLCGHMDY----VRVCTFHHEYPWILSCSDDQTIRIWNWQSRNCI 130
Query: 391 VVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ*N-DQIMLYCDLQ 215
+LT H + A+ + ++ + LD + +WD+ + N + + + Q
Sbjct: 131 AILTGHSHYVMCAAFHPSE------DLIVSASLDQTVRVWDISGLRMKNAAPVSMSLEDQ 184
Query: 214 VMICHSLCQFCLYTXTNALIDYIFRQHXK 128
+ H+ L+ T+A++ ++ H +
Sbjct: 185 LAQAHNSISNDLFGSTDAIVKFVLEGHDR 213
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 34.7 bits (76), Expect = 0.014
Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 2/161 (1%)
Frame = -1
Query: 727 DRPCLLAGYEAGWLLLWDLNTNKCISKLQVLECPMSVDYHLEQQRG--IIGNASNVIQIF 554
D LLAG G + ++DL+T + L + P+ V + G+ ++++
Sbjct: 92 DGKLLLAGDATGLVQIFDLSTRSILRALDAHQFPVHVTQFCPYANTTFLSGSDDKTVKVW 151
Query: 553 NLGRXXXXXXXXXDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEH 374
+L TR SGG+DG IR++ P V+ H
Sbjct: 152 DLSTGAVQYDLSGHEDYVRTASWMSATR-----LVSGGYDGTIRLWDTRIADPEVMSFSH 206
Query: 373 KQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 251
+AI DV + S +++AGG +I +WDL +Q
Sbjct: 207 GEAI-DVVLPMQSGST----VISAGG--PSIKVWDLVAGRQ 240
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.9 bits (74), Expect = 0.025
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = -1
Query: 490 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 311
+ V DGK +G D IRI+ R +LT H+Q I + +S + +L
Sbjct: 337 VRSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTL----- 391
Query: 310 MAAGGLDGAITLWDLYNSKQ 251
+G D + LWD+ +Q
Sbjct: 392 -VSGSGDRTVCLWDVEAGEQ 410
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 32.7 bits (71), Expect = 0.058
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 1/143 (0%)
Frame = -1
Query: 682 LWDLNTNKCISK-LQVLECPMSVDYHLEQQRGIIGNASNVIQIFNLGRXXXXXXXXXDVT 506
LWDL +C + + +SV + ++ + G+ I+I+N+ +
Sbjct: 89 LWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIGNCKYTITDGGHS 148
Query: 505 IKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSL 326
+ + D F S GWD ++++ + H + V S +
Sbjct: 149 DWVSCV-RFSPNPDNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPD---- 203
Query: 325 WKAYIMAAGGLDGAITLWDLYNS 257
+ A+GG DG + LWDL S
Sbjct: 204 --GSLCASGGRDGTLMLWDLNES 224
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -1
Query: 466 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 287
DG+ SG G+ + W + + + L H +Q +A+ ++ S + + +DG
Sbjct: 497 DGRFVFSGDSSGNACFWDWKTCKLMAKLPAHSGPVQSMAFHPQETS----KVATSSIVDG 552
Query: 286 AITLWD 269
+I WD
Sbjct: 553 SIKYWD 558
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 31.1 bits (67), Expect = 0.18
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 14/157 (8%)
Frame = -1
Query: 694 GWLLLWDLNTNKCISKLQVLECPMSVDYHLEQQRGIIGNASNVI--QIFNLGRXXXXXXX 521
G L L+D +T + K + + Y Q G + +++ + +++ L
Sbjct: 423 GCLALFDASTASFVQKFNTADEAFTSLYMHPSQVGFVASSNTLSNGRVYYLDTRMYKVCL 482
Query: 520 XXDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRP--LVVLTEH---KQAIQD 356
T K+ IN + G + TS G D + F W S +P + L +H K D
Sbjct: 483 NFTTTQKD--INHATISNSGILVTSSGTDN--QTFVWDSRKPDKPLSLLKHGKTKMIHFD 538
Query: 355 VAYSTE-----KVSLW--KAYIMAAGGLDGAITLWDL 266
A E ++ W K + GG DG + +WDL
Sbjct: 539 GANEEEVDAGINMAQWQPKGNLFVTGGSDGIVKVWDL 575
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 493 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVV-LTEHKQAIQDVAYSTEKVSL 326
GIN + + G +F +GG DG ++++ P + TE AI +S + L
Sbjct: 548 GINMAQWQPKGNLFVTGGSDGIVKVWDLRLNNPFIQNFTEMNSAITYGGFSEDASKL 604
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.7 bits (66), Expect = 0.23
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = -1
Query: 688 LLLWDLNTNKCISKLQVLECPMSVDYHLEQQRGIIGNASNVIQIFNL 548
L +WDLNT C +L+CP+ + + ++ + + +Q++++
Sbjct: 683 LRVWDLNTGSC---RDILKCPLGHIFFQHDESKVVSGSHSTLQLWDI 726
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 30.7 bits (66), Expect = 0.23
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -1
Query: 457 VFTSGGWDGHIRIFSWFSMRPLV-VLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAI 281
V +SGG D HI + VLT H+Q + + +++ + ++A+GG D A+
Sbjct: 345 VLSSGGRDNHILHRDVRAPEHYFRVLTAHRQEVCGLEWNSNE------NLLASGGNDNAL 398
Query: 280 TLWDLYNSK 254
+WD + K
Sbjct: 399 MVWDKFEEK 407
Score = 29.5 bits (63), Expect = 0.54
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -1
Query: 469 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG-- 296
S+ + SGG D + ++ F +PL H A++ + +S + I+A+GG
Sbjct: 384 SNENLLASGGNDNALMVWDKFEEKPLYSFHNHIAAVKAITWSPHQRG-----ILASGGGT 438
Query: 295 LDGAITLWD 269
D I LW+
Sbjct: 439 ADRTIKLWN 447
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -1
Query: 463 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 284
G + SG WD +RI++ L +L H + I V+ S + + A DG
Sbjct: 150 GTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISAD------GTLCATASYDGM 203
Query: 283 ITLWDLYNSK 254
+WD+ + +
Sbjct: 204 ARIWDVLSGQ 213
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 30.3 bits (65), Expect = 0.31
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Frame = -1
Query: 715 LLAGYEAGWLLLWDLNTNKCISKLQVLECPM-SVDYHLEQQRGIIGNASNVIQIFNLGRX 539
L++G + +W ++T +C+ L+ + SV Y E+ I G+ I++++L
Sbjct: 520 LVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYSVLYEPERNICISGSMDKSIRVWDLSTG 579
Query: 538 XXXXXXXXD---VTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQ 368
VT+ N N++ SG D IRI+ + +PL+VL +
Sbjct: 580 TCKYVLEGHDAFVTLLNVFQNRL---------ISGSADSTIRIWDLNTGKPLMVLPSNSG 630
Query: 367 AIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSK 254
I K+ G DG++ LWD+ K
Sbjct: 631 YISSFVSDEHKI---------ISGNDGSVKLWDVRTGK 659
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = -1
Query: 472 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG- 296
RS G++ SGG D ++ ++ + S RPL EH A++ + +S + I+A+GG
Sbjct: 259 RSLGQL-ASGGNDNNLFVWDYRSSRPLHKFEEHTAAVKAIGWSPHQRG-----ILASGGG 312
Query: 295 -LDGAITL 275
+D +T+
Sbjct: 313 TIDRCLTI 320
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 29.9 bits (64), Expect = 0.41
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -1
Query: 466 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 287
DG +GG D +R+ W S +T + + V S K +AAG DG
Sbjct: 115 DGTYIATGGMDSQVRL--WKSSTGFEFITAFETVDEIVWLSWHP----KGLFLAAGCNDG 168
Query: 286 AITLWDLYNSK 254
+I +W L + K
Sbjct: 169 SIWMWSLPSGK 179
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/82 (20%), Positives = 35/82 (42%)
Frame = -1
Query: 490 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 311
+ V DG S +G I ++ + R + + H+ I +++S E +
Sbjct: 508 VTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSREST------V 561
Query: 310 MAAGGLDGAITLWDLYNSKQ*N 245
+ +GG D + WD++ + N
Sbjct: 562 LVSGGSDCTVRAWDVFKTNYNN 583
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 28.7 bits (61), Expect = 0.95
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -1
Query: 301 GGLDGAITLWDLYNS 257
GG+DGAI +WDL N+
Sbjct: 195 GGIDGAIKIWDLRNN 209
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 28.7 bits (61), Expect = 0.95
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 715 LLAGYEAGWLLLWDLNTNKCISKLQVLECPM 623
+++G G L++WDLN + +S L V + P+
Sbjct: 2357 IVSGDAGGNLIIWDLNRAEFVSSLSVYKLPI 2387
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 28.7 bits (61), Expect = 0.95
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = -1
Query: 682 LWDLNTNKCISKLQVLECPMSVDYHLEQQRGIIGNASNVIQIFNL 548
LWD+ T +CI KL++ ++ Q +G+ +I+++++
Sbjct: 428 LWDVETGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSV 472
Score = 25.4 bits (53), Expect = 8.8
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = -1
Query: 466 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 287
DGK +G D I+++ + + V + H+Q I + +S +I++ G D
Sbjct: 371 DGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHN-----GRFIVSGSG-DR 424
Query: 286 AITLWDL 266
LWD+
Sbjct: 425 TARLWDV 431
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = -1
Query: 508 TIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVS 329
T+K+ ++ ++G SG +G + I+ + VLT H +AIQ V +S+
Sbjct: 21 TLKHGHATSIRFSTNGYHLASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSS---- 76
Query: 328 LWKAYIMAAGGLDGAITLWDL 266
+++ A D LWDL
Sbjct: 77 -CDRFLLTA-SRDWKCILWDL 95
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 313 IMAAGGLDGAITLWDLYNSKQ*NDQIML 230
+M +GG + +I +WDL N Q D+ ++
Sbjct: 62 LMVSGGANSSINVWDLQNIDQKEDEDLI 89
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = -1
Query: 469 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 290
+DG S G I+++ S V +H + +++S + I+ +GG D
Sbjct: 539 ADGLSLASADESGIIKVWDLRSSNQHVSFVKHSSIVYSLSFSYDNK------ILVSGGAD 592
Query: 289 GAITLWDL 266
+ WDL
Sbjct: 593 TDVNFWDL 600
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 466 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAY 347
DG++ GG GHI F W + + L L ++ ++DV +
Sbjct: 112 DGRMILLGGRKGHISAFDWRTGKLLTEL-HLRETVRDVKW 150
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 27.1 bits (57), Expect = 2.9
Identities = 33/157 (21%), Positives = 62/157 (39%)
Frame = -1
Query: 727 DRPCLLAGYEAGWLLLWDLNTNKCISKLQVLECPMSVDYHLEQQRGIIGNASNVIQIFNL 548
DR +L+G + + +W L TN C+ P+ L R + I+ +++
Sbjct: 403 DRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQ-SLALADSRLFSCSLDGTIKQWDI 461
Query: 547 GRXXXXXXXXXDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQ 368
+ + G+ ++ +D SG DG +++ W + + L H +
Sbjct: 462 EKKKCVHTLFGHI----EGVWEI--AADHLRLISGAHDGVVKV--WEACECVHTLKNHSE 513
Query: 367 AIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNS 257
+ VA +V +G DG I LW L+N+
Sbjct: 514 PVTSVALGDCEV--------VSGSEDGKIYLW-LFNN 541
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -1
Query: 466 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 287
D SG D IRI+ S + L L+ H + + VAY+ Y A+ G D
Sbjct: 439 DDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNYVAYNPV-----DPYQFASAGDDN 493
Query: 286 AITLW 272
+ +W
Sbjct: 494 TVRIW 498
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -1
Query: 394 LVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 251
L + EH ++ V S K S K+ ++A+GGLD I +WD YN Q
Sbjct: 116 LSTIGEHTDYVKRV--SIPKYS--KSPLVASGGLDKRIIVWD-YNVGQ 158
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 602 TAKRNHRQCFKCDT 561
+ K+ H QCFKCDT
Sbjct: 274 SGKKLHPQCFKCDT 287
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = -1
Query: 511 VTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFS------WFSMR 398
++++ +N + + DG++F SG D ++ FS WFS R
Sbjct: 177 ISVQGINVNCIVSSEDGRIFFSGNKDPNLYEFSYQLEEGWFSRR 220
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 712 LAGYEAGWLLLWDL 671
L G GWLLLWDL
Sbjct: 1386 LIGTTKGWLLLWDL 1399
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 742 IEFPCDRPCLLAGYEAGWLLLWDLNTNKCISKLQVLECPMSVDYHLEQQR 593
IEF CD P + Y + +W N S ++ LE D+ E+ R
Sbjct: 1801 IEFKCDAPYRIHNYTGHAVSVWADFENAADSCVRHLENNEETDWKFEEWR 1850
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 14 YEFLSFVHFFASHLHRSATXHQHNXMPLHXFVH 112
Y L F+ FFA LH + + H LH F H
Sbjct: 36 YSILCFLSFFALLLHLPCSIYSHT---LHFFHH 65
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.4 bits (53), Expect = 8.8
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 457 VFTSGGWDGHIRIF 416
+F SG WDG+IR++
Sbjct: 425 LFASGSWDGNIRLW 438
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 490 INKVKTRSDGKVFTSGGWDGHIRIFS 413
I+ + SDG + +G WD +R++S
Sbjct: 277 ISSLALTSDGTMLATGSWDECVRLWS 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,727
Number of Sequences: 5004
Number of extensions: 56284
Number of successful extensions: 209
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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