Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M23
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical pr...    30   0.58 
U88172-6|AAB42261.1|  310|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z70308-9|CAA94346.2|  402|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U40802-10|AAK19008.2|  374|Caenorhabditis elegans Hypothetical p...    26   9.4  
AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin (cae...    26   9.4  

>Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical
           protein F25B3.4 protein.
          Length = 363

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 17/50 (34%), Positives = 31/50 (62%)
 Frame = +1

Query: 28  VSLLFAHKIIFPLHYVLLLSSPIRALSSVRWGNLPFFPPSKEKCSDRHNR 177
           + LLFA+K+IFP H+ +L  +   +L + ++G   F+    E+C  R+N+
Sbjct: 153 ILLLFAYKVIFPNHFFMLRGNHECSLINRQYG---FY----EECQRRYNK 195


>U88172-6|AAB42261.1|  310|Caenorhabditis elegans Hypothetical
           protein ZK354.9 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 28  VSLLFAHKIIFPLHYVLL 81
           + LLFA+K+IFP H+ +L
Sbjct: 88  ILLLFAYKVIFPNHFFML 105


>Z70308-9|CAA94346.2|  402|Caenorhabditis elegans Hypothetical
           protein F49E11.7 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +1

Query: 28  VSLLFAHKIIFPLHYVLL 81
           +SL+FA K+++P +Y+LL
Sbjct: 134 ISLVFALKVVYPTNYILL 151


>Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical
           protein F18A11.2 protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 395 DESDNKLWRRMTVNCE 348
           D  D  LWR MTV CE
Sbjct: 313 DTKDMDLWREMTVGCE 328


>U40802-10|AAK19008.2|  374|Caenorhabditis elegans Hypothetical
           protein ZC477.2 protein.
          Length = 374

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 28  VSLLFAHKIIFPLHYVLL 81
           + LLFA KI FP  Y+LL
Sbjct: 141 ICLLFAFKICFPQKYILL 158


>AF039046-6|AAB94216.1|   66|Caenorhabditis elegans Caenacin
           (caenorhabditis bacteriocin)protein 4 protein.
          Length = 66

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 64  LHYVLLLSSPIRALSSVRWGNLPF 135
           L Y+L+L   I A+SS +WG  P+
Sbjct: 2   LRYILVLLVAIIAMSSAQWGYGPY 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,094,886
Number of Sequences: 27780
Number of extensions: 201155
Number of successful extensions: 525
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)