Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M22
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.5  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   6.0  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   6.0  

>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +2

Query: 488 RGSPPVRKKT*RIIQTPQPPAAKNIVLVQ*LVDSLSTLTMTLLERTGRCLN 640
           + S  + K+   I+   Q P  K+I  +  LVDS  T T +LL+R G CL+
Sbjct: 54  KNSSAIPKRVDNILLRSQKP--KHIECL--LVDSKITKTRSLLKRFGSCLD 100


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 286 PYIYAIKKKFL*KCSRRSCSKTIPTAPTVTGYMTI 182
           PY+ +++ KF    + R  S T+P   TV G MTI
Sbjct: 179 PYLESVESKFYVSYNAREISVTLPRLKTV-GDMTI 212


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 13  HIYXGATLTRTFVSYFLDI*KQH*FQTMTATHNYNISTNHIPGLMFTEDNGYLVRS 180
           +++  ++L   F+   +D    H +  +T    +++ TN  PGL +T+D   L+ S
Sbjct: 74  NVFAESSLYNAFIVATVDG-SLHSYDRITGQELWSLFTNANPGLSYTKDENSLLSS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,610
Number of Sequences: 5004
Number of extensions: 68099
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)