Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M22
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.6  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.3  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 696 NSFIN*KYNKHMYFNRNNRLRQRPV 622
           N++ N  YNK +Y+N  N + Q PV
Sbjct: 101 NNYNNNNYNKKLYYNIIN-IEQIPV 124


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 696 NSFIN*KYNKHMYFNRNNRLRQRPV 622
           N++ N  YNK +Y+N  N + Q PV
Sbjct: 101 NNYNNNNYNKKLYYNIIN-IEQIPV 124


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 684 N*KYNKHMYFNRNNRLRQRPVRSNSVIVNVDRL 586
           N KYN +  +N NN    + +   + I+N++++
Sbjct: 95  NYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQI 127


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 401 RLPHPSNRNALL-LHGRNRQGSGTYPCGLTR 490
           +LP    ++ LL L+G NR+  G Y C + R
Sbjct: 373 QLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 401 RLPHPSNRNALL-LHGRNRQGSGTYPCGLTR 490
           +LP    ++ LL L+G NR+  G Y C + R
Sbjct: 373 QLPGTGRQSELLRLNGINREDRGMYQCIVRR 403


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 696 NSFIN*KYNKHMYFNRNNRLRQRPV 622
           N+  N  YNK +Y+N  N + Q PV
Sbjct: 321 NTIHNNNYNKKLYYNIIN-IEQIPV 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,000
Number of Sequences: 438
Number of extensions: 5808
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)