Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M21
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.22 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.68 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   4.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   4.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   4.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   8.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   8.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.22
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 197 PVPFDRQSVHHANATHPHQDAGSPP 123
           P+P + Q     NA HP +D G  P
Sbjct: 108 PIPPEIQRALEWNAAHPEEDDGGQP 132


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 0.68
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 179 QSVHHANATHPHQDAGSPP 123
           Q +HH  +THP   A + P
Sbjct: 812 QQLHHHQSTHPQAQAQAQP 830


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 130 PLHVPSQNHSRSRLLPPPPGK-SREEG 53
           PL+   + H   R  PP P + S+++G
Sbjct: 238 PLYQQPERHYERRATPPQPDRTSKDQG 264


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 109  NH-SRSRLLPPPPGKSREEGLT 47
            NH + +R  PPPP     EGL+
Sbjct: 1693 NHCAPNRRCPPPPRMGSAEGLS 1714


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 272 HNGYNNG*PR 243
           HNG NNG PR
Sbjct: 315 HNGSNNGSPR 324


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 67  ISLAVEEGAGSGSDFVTAHGGDPASWW 147
           +S A E+G     DFV  H  D   W+
Sbjct: 106 VSAAHEKGLKIILDFVPNHTSDQHEWF 132


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 308 NIKTSTFTYRASHNGYNNG*PRDRGRTQ-TEIEGCSPLPVP 189
           N  ++ + Y  ++N YNN    +  + Q   I     +PVP
Sbjct: 86  NSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVP 126


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 67  ISLAVEEGAGSGSDFVTAHGGDPASWW 147
           +S A E+G     DFV  H  D   W+
Sbjct: 106 VSAAHEKGLKIILDFVPNHTSDQHEWF 132


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 170 HHANATHPHQDAGSP 126
           HH++A  PH    +P
Sbjct: 433 HHSHAATPHHQHSTP 447


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 260 YTRCETPCT 286
           YTRCE P T
Sbjct: 408 YTRCENPKT 416


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -3

Query: 284 YRASHNGYNNG*PRDRGRTQTEIEGCSPLPVP 189
           Y  ++N YNN    +  +    I     +PVP
Sbjct: 334 YNNNYNNYNNNNYNNYKKLYYNIINIEQIPVP 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,926
Number of Sequences: 438
Number of extensions: 2668
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)