Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_M19
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0132 - 22611030-22611908,22612016-22612135,22612644-226128... 34 0.15
01_02_0100 - 11108275-11108535,11110333-11111619 32 0.44
09_04_0358 - 16937528-16937587,16938255-16938282,16938305-169383... 30 1.8
07_01_0431 + 3283252-3283274,3283684-3283819,3285839-3286682,328... 29 3.1
06_03_1061 + 27282979-27286854 29 4.1
07_03_0256 - 15875066-15877025,15877292-15877911 28 7.2
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879... 28 7.2
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 7.2
01_01_0816 + 6360526-6360802,6360902-6361117,6361231-6361379,636... 28 7.2
>05_05_0132 -
22611030-22611908,22612016-22612135,22612644-22612856,
22612968-22613288,22613421-22613504
Length = 538
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/81 (32%), Positives = 34/81 (41%)
Frame = -3
Query: 251 GRPARALHEPEALADESARHPQTGHTGADN*RRGLLRERKGYFCSPSLPLRTGIRARRIC 72
G R + E AD+ R Q G G D RG R+ SPS L G +
Sbjct: 428 GERRRGAADAELHADDQVREGQGGSAGGD---RGPRHRREDGARSPSGDLTVGDQQAPFP 484
Query: 71 DLQEQAAQRPRGQRDTGAILD 9
L+ QA QRP ++ G +D
Sbjct: 485 GLRGQAEQRPVAEQGEGREVD 505
>01_02_0100 - 11108275-11108535,11110333-11111619
Length = 515
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 314 PVYGA*RAQDEGLAFAS--RSGLGRPARALHEPEALADESAR-HPQTG 180
P +GA A+ E LA A+ GL R H+ EA +DESAR P+ G
Sbjct: 7 PSHGAQAAEAEALAAAADLEQGLTRHLMEYHQSEASSDESARQRPRVG 54
>09_04_0358 -
16937528-16937587,16938255-16938282,16938305-16938328,
16938466-16938504,16938834-16938877,16939050-16939097
Length = 80
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 151 DCYEREKVISAHPAFRYELGYAPGESVTFKNKLPKD 44
DC E+++ A PAF+ + + G++VT K +P D
Sbjct: 46 DCSSNERILCALPAFQVRMRHPRGQAVTMK-IMPSD 80
>07_01_0431 +
3283252-3283274,3283684-3283819,3285839-3286682,
3286785-3286856,3286906-3286937,3287020-3287433
Length = 506
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 113 WVSRNNL-FSLVTVLGASYQLRYVQFGDGEQIHQQVLLVRVERAL 244
W SR +L F TVL + ++ DG+++++++ + RV+ L
Sbjct: 82 WCSRESLVFRFYTVLSMHHHIKRCWTSDGQRLNKELFIERVDSVL 126
>06_03_1061 + 27282979-27286854
Length = 1291
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = -2
Query: 129 LFLLTQPSVTNWDTRQANL*PSRTS-----CPKTTR 37
LF+ T P + +W+ +N+ PS TS CPK +R
Sbjct: 899 LFIKTMPELEDWNVDDSNVFPSLTSLTVEDCPKLSR 934
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 28.3 bits (60), Expect = 7.2
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Frame = +2
Query: 65 EGHRFAWRVSQFVTEGWVSRNNLFSLVTVLGAS-------YQLRYVQF---GDGEQIHQQ 214
+G A RV + + VSR+N + VT++GAS ++R + F +G
Sbjct: 422 DGQVHACRVHDTILDFVVSRSNEENFVTMVGASDLTSTPTGKIRRLSFHKNSEGSVTMPT 481
Query: 215 VLLVRVERALVGPVHFARQTPVLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVV 379
LL R+L +H A Q P L LG + LR+L ++++ L +H D S G ++
Sbjct: 482 YLLRSHVRSLTTFLH-AGQVPPL-LGFYGLRVL-DLENCSGLKNH-DLKSIGRLI 532
>04_04_1532 -
34187153-34187308,34187426-34187551,34187856-34187977,
34188058-34188181,34189671-34189821,34190506-34190720,
34191142-34191343,34191423-34191597,34191746-34192055,
34192141-34192356
Length = 598
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/81 (30%), Positives = 37/81 (45%)
Frame = +2
Query: 224 VRVERALVGPVHFARQTPVLHLGLFTLRILVEVQSLYVLDDHFDFTSSGPVVH*QLCMSG 403
+++E A + + R +LH L T I+V S V+D F F GP M
Sbjct: 224 LKLEIAELKSMFIERAQALLHGDLHTGSIMVTPDSTQVIDPEFAF--YGP-------MGY 274
Query: 404 DISQILVFVLLLNFSQEGRCE 466
DI L ++L FSQ+G +
Sbjct: 275 DIGAFLGNLILAYFSQDGHAD 295
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 71 HRFAWRVSQFVTEGWVSRNNLFSLVTVLGASYQLRYVQFGDGEQI 205
HR WR+SQF E +F L + G + Q RY+Q D +Q+
Sbjct: 602 HRSGWRISQFGVEVETPDFWMFKL-DIFGKAIQ-RYIQKPDKKQL 644
>01_01_0816 +
6360526-6360802,6360902-6361117,6361231-6361379,
6361474-6361750,6362228-6362457
Length = 382
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 398 SGDISQILVFVLLLNFSQEGRCESFAGHLVTES--TFFNSFLNLGN 529
S ++ +L+ +LLL + G+ ++GH +S +F NS+ + GN
Sbjct: 6 SNKMTLLLLLLLLLGCTHHGQANMYSGHPKIDSIFSFGNSYSDTGN 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,999,765
Number of Sequences: 37544
Number of extensions: 394179
Number of successful extensions: 995
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -