Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M18
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 150 KPDELFETISQALVNAADRDAXSGWGAVVDSIEKDKSTETQRTR 19
           +PDE   T  ++ VN A  +       +VD  E+D     +RTR
Sbjct: 299 RPDENVVTDKKSKVNFALPELQHNLNILVDMCEQDIIQNDRRTR 342


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 31  CLRALVFFNAVNNGTPTGXGVTICR 105
           CLR+++ FN    G  +   VT+ R
Sbjct: 335 CLRSIILFNPEVRGLKSIQEVTLLR 359


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 31  CLRALVFFNAVNNGTPTGXGVTICR 105
           CLR+++ FN    G  +   VT+ R
Sbjct: 335 CLRSIILFNPEVRGLKSIQEVTLLR 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,376
Number of Sequences: 438
Number of extensions: 4692
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)