Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M16
         (345 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   1.9  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    25   4.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    24   5.8  
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo...    24   7.6  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 168 ISYPYPLV*LDIYLLTYIHHHDHSETIKYLSTS*NYYCTIVF 293
           +S  Y  + +DI LL    H  HS + ++LS+   Y+CT +F
Sbjct: 326 VSLNYTTI-VDIILL----HQSHSTSKEWLSSLEQYHCTYLF 362


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 33  VKVYSIVNNRSSF*ARINGLTGM*WQ 110
           +KV+SI NN+ +    + G +G  WQ
Sbjct: 33  IKVFSIENNQQTLLETLRGHSGPVWQ 58


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = -2

Query: 323 IVFTILHLPLKYYSAIVILTSR*VLNSF*MVVMVNISKKIYV 198
           +VF  +H+P +Y+SA  +  S  +L S    +++NI+  +++
Sbjct: 396 VVFEYIHVPRRYHSARRLWPSMLLLIS---TLLLNIAPVVFI 434


>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 325

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 128 KGIRRYSCS*KRSDLISISPGIAGHISSYLY-SPSRPF 238
           +G+  Y C    + ++ ++PGI   +  + + SPS  F
Sbjct: 140 QGVPDYICENPYAIIVGLNPGITSSLKGHAFASPSNRF 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,396
Number of Sequences: 5004
Number of extensions: 23543
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)