Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M16
         (345 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0027 - 225670-225870,225989-226126,226315-226392,226523-22...    27   3.0  
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20...    27   3.0  
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082...    27   5.2  
03_02_0639 - 10047105-10047204,10047315-10047495,10049375-100494...    27   5.2  
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786...    26   6.9  

>12_01_0027 -
           225670-225870,225989-226126,226315-226392,226523-226708,
           226853-226945,227797-227863,228660-228964
          Length = 355

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 177 PYPLV*LDIYLLTYIHHHDHSETIKYLSTS*NY 275
           PY +  + + L+TY+HHH H++   Y     +Y
Sbjct: 215 PYLVFVMWLDLVTYLHHHGHNDLPWYRGEEWSY 247


>11_01_0027 -
           199196-199396,199514-199651,200207-200284,200419-200604,
           200754-200846,201665-201731,202374-202675
          Length = 354

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 177 PYPLV*LDIYLLTYIHHHDHSETIKYLSTS*NY 275
           PY +  + + L+TY+HHH H++   Y     +Y
Sbjct: 214 PYLVFVMWLDLVTYLHHHGHNDLPWYRGEEWSY 246


>06_03_1276 -
           28907726-28907842,28908012-28908062,28908146-28908254,
           28908345-28908430,28908537-28908650,28908731-28908790,
           28909088-28909303,28909401-28909514,28910632-28910853,
           28910946-28911050,28911136-28911276,28911368-28911472,
           28911538-28911645,28911753-28911911,28912060-28912140,
           28912219-28912330,28912433-28912515,28912631-28912669,
           28913061-28913126,28913601-28913643,28913969-28914036,
           28914264-28914323,28914409-28914529,28915167-28915267,
           28915354-28915494
          Length = 873

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -3

Query: 172 EIRPLLAAAISTYPFFFVTICCHYIPVKPLI 80
           +++PL    I  Y + +    C Y+P+ P++
Sbjct: 828 DLKPLSVPLIFAYAYAYALSMCRYLPLTPVL 858


>03_02_0639 -
           10047105-10047204,10047315-10047495,10049375-10049464,
           10050718-10050796,10050887-10051024,10051897-10051977,
           10052079-10052264,10052366-10052458,10052537-10052603,
           10052709-10052798,10052909-10053441
          Length = 545

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 PYPLV*LDIYLLTYIHHHDHSETIKY 254
           PY +  + +  +TY+HHH H + + +
Sbjct: 321 PYVIFVMWLDFVTYLHHHGHEDKLPW 346


>07_03_1782 +
           29477748-29478169,29478257-29478413,29478518-29478610,
           29478753-29478938,29479107-29479187,29479788-29479925,
           29480044-29480208
          Length = 413

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 177 PYPLV*LDIYLLTYIHHHDHSETIKY 254
           PY +  + +  +TY+HHH H++ + +
Sbjct: 284 PYWIFVMWLDFVTYLHHHGHNDKLPW 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,892,941
Number of Sequences: 37544
Number of extensions: 137943
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)