Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_M12
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 36 0.005
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 35 0.012
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 35 0.012
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 32 0.064
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 32 0.084
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 32 0.084
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 31 0.19
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 30 0.34
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 29 0.45
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 29 0.45
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 29 0.59
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 29 0.78
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 28 1.0
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 27 1.8
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 2.4
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 27 3.2
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 26 4.2
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 26 4.2
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 4.2
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 5.5
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 5.5
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 5.5
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 5.5
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 5.5
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 26 5.5
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 26 5.5
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 7.3
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 9.7
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 9.7
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom... 25 9.7
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 35.9 bits (79), Expect = 0.005
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 652 CGHVFCFLCVKGVAHQSRKCAMCR 581
CGH+FC+ C+ G + +C +CR
Sbjct: 271 CGHIFCWSCINGWTSKKSECPLCR 294
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 226 IKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDVVSRI 62
I DE E++ ++ D +TE+II D N S H+ + + S + E IDD S +
Sbjct: 393 IPDEDEES-DQYSDVEDTEVIIEDQ-DNQEISNHVAEEKIDSDEEETIDDAKSEM 445
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 34.7 bits (76), Expect = 0.012
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -1
Query: 655 SCGHVFCFLCVKGVAHQSRKCAMCRTEI 572
+CGH++C C++ S C MC+T++
Sbjct: 1106 TCGHLYCSFCLEAWLKHSSSCPMCKTKL 1133
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 32.3 bits (70), Expect = 0.064
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 652 CGHVFCFLCVKGVAHQSRKCAMCRTEIP 569
CGH FC C+ QS +C CR +P
Sbjct: 184 CGHTFCGPCLMQALTQSPQCPTCRFGLP 211
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 31.9 bits (69), Expect = 0.084
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 652 CGHVFCFLCVKGVAHQSRKCAMCRTEI 572
CGH +C+ C+ +S+ C CR ++
Sbjct: 100 CGHTYCYECLLNWLKESKSCPTCRQKL 126
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 31.9 bits (69), Expect = 0.084
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = -1
Query: 652 CGHVFCFLCVK---GVAHQSRKCAMCRTEI 572
CGH+FC C+ G ++KC +CR ++
Sbjct: 221 CGHIFCNFCILSALGTTAATQKCPVCRRKV 250
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 30.7 bits (66), Expect = 0.19
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 652 CGHVFCFLCV-KGVAHQSRKCAMC 584
CGH FC+ C+ K + + R+C +C
Sbjct: 643 CGHGFCYQCIQKRIETRQRRCPIC 666
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.34
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 655 SCGHVFCFLCVKGVAHQSRKCAMCR 581
SC H FC C++ + C CR
Sbjct: 43 SCSHTFCSFCIRDYLREHPMCPACR 67
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 250 NINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQ 113
N + P + + NVNE ++ ETE + + +N+ +E ++NQ
Sbjct: 409 NHQEKPSSLPAVEQINVNEENNTPETEGLEDEKEENNTAAESLINQ 454
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 29.5 bits (63), Expect = 0.45
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 658 LSCGHVFCFLCVKGVAHQSRKCAMCRTEI 572
L CGH+ F C++ + + C +CR +
Sbjct: 326 LPCGHILHFHCLRNWLERQQTCPICRRSV 354
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 29.1 bits (62), Expect = 0.59
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 658 LSCGHVFCFLCVKGVAHQSRKCAMCRTEIP 569
+ CGH+F C++ C +CR E+P
Sbjct: 125 MPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 28.7 bits (61), Expect = 0.78
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 658 LSCGHVFCFLCVKGVAHQSRKCAMCRTE-IPLDYFE 554
+ CGH F C++ + C +CRTE + +D E
Sbjct: 54 IPCGHYFHNHCLESWCRVANTCPLCRTEFLKVDVLE 89
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 655 SCGHVFCFLCVKG-VAHQSRKCAMCRT 578
+CGH FC C++ H++ C C T
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCET 680
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -1
Query: 652 CGHVFCFLCVKGVAHQSRKCAM--CRTEI 572
CGH+FC C K + ++ C + CR I
Sbjct: 167 CGHLFCSTCAKELRKKTVPCPVQHCRKRI 195
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = -1
Query: 277 AKGIAGIRTNI-----NQVPIEIKDETEDNVNENHDNAETEIIIT-DNVQNSNGSEHILN 116
AK I GI N+ N+ K+ETED + N D E I T + S+ S+ +++
Sbjct: 62 AKAIGGIVENVPVWNPNRTSPVKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVS 121
Query: 115 QNVSS 101
N++S
Sbjct: 122 SNLTS 126
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 421 FLIQSCYAHHISTNHFFLHNTI 486
FLI+S Y H + N FF H T+
Sbjct: 263 FLIKSFYGH-VQANFFFFHETL 283
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 357 STMYKVPASSKVHSDSPLLKAFSNSELLRSSY 452
S +Y++ HSD P +FS S+ LRS Y
Sbjct: 156 SPLYQI--DEPYHSDEPYAFSFSRSDTLRSLY 185
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -1
Query: 607 QSRKCAMCRTEIPLDYFEN---PVLLDK 533
QSR C +CR+++P D N P+L +K
Sbjct: 46 QSRACPLCRSKLPKDSRGNVLEPILSEK 73
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 4.2
Identities = 8/32 (25%), Positives = 20/32 (62%)
Frame = -1
Query: 208 DNVNENHDNAETEIIITDNVQNSNGSEHILNQ 113
D++ D+AE + + DN +NG++++ ++
Sbjct: 742 DDIEVEEDDAEAQELENDNTNTTNGNDNVSSE 773
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 271 GIAGIRTNINQVPIEIKDETEDNVNENH 188
G G+R+ ++Q+P E D T D + H
Sbjct: 328 GEKGLRSELSQIPTENIDSTTDRFDNYH 355
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -1
Query: 277 AKGIAGIRTNINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVS 104
A GI T ++ PI + ++ E N N+++ E+I DN+ N N NQ V+
Sbjct: 359 ANGIESDFTRVDHEPIIVNNDDE---NGNNESENEEVIEEDNL-NRNVIAEAQNQVVA 412
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 658 LSCGHVFCFLCVKGVAHQSRKCAMCRTEI-PLDYFENPVLLDKSN 527
L C H F C+K + CA+CR + P N D +N
Sbjct: 412 LPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNNTSTDSAN 456
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 346 LLGSQQCTKSQPVVKYTLILHY*RHFLIQSCYAHHISTN 462
L+ + QC+ VV LI+ HFL + C H I+++
Sbjct: 740 LIETLQCSLCMDVVAELLIIVPCGHFLCRECLTHVITSS 778
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -1
Query: 250 NINQVPIEIKDETEDNVNENHDNAETEIIITDNVQNSNGSEHILNQNVSSVQSEDIDDV 74
N N+ + D E+HDN++ E + N+ +SN E + + S+ +S ++DD+
Sbjct: 57 NSNKESTNLDDLNMLEEPEHHDNSKKE---STNLDDSNMLEEPKHHDNSNKESTNLDDL 112
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = -1
Query: 658 LSCGHVFCFLCVKGVAHQSRK---CAMCRTE 575
L C HVFC C+ + Q +K C +CR +
Sbjct: 373 LGCSHVFCLHCL--IILQKQKVDFCPLCRAK 401
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 652 CGHVFCFLCVKGVAHQSRKCAMC 584
CGHV+C C K + R + C
Sbjct: 212 CGHVYCGSCAKVLKTSKRSQSKC 234
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -1
Query: 652 CGHVFCFLCV 623
CGHV+CF C+
Sbjct: 230 CGHVYCFSCL 239
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.0 bits (52), Expect = 9.7
Identities = 8/33 (24%), Positives = 22/33 (66%)
Frame = +2
Query: 119 QNVFRSITILHIICYYNFSFCIIMIFVDIIFSF 217
+N+F+ + +L +ICY + F I+++ + ++ +
Sbjct: 1025 RNLFQIVFVLAVICYSSPMFMILIVPLFFLYRY 1057
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +1
Query: 547 QGFQSSLKEFLCDTLHIFC--FDELH 618
Q Q+ LKE L D I C FDE H
Sbjct: 212 QTLQNDLKEHLLDAKSIICLIFDEAH 237
>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 236
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 241 QVPIEIKDETEDNVNENHDNAETEIIITDNVQN 143
Q+P+E+K + D V EN+ + ET + +N+ N
Sbjct: 163 QMPLELKCQLADIVIENNSDLET---LYENIHN 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,655
Number of Sequences: 5004
Number of extensions: 50432
Number of successful extensions: 208
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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