Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_M09
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 168 6e-43
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 79 4e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 74 1e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 5e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 58 7e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 8e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 4e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 45 7e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 42 7e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.2
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.0
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 4.7
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 6.2
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 8.1
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 168 bits (408), Expect = 6e-43
Identities = 75/85 (88%), Positives = 82/85 (96%)
Frame = -1
Query: 484 RDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLS 305
+DLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGSILASLS
Sbjct: 291 KDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLS 350
Query: 304 TFQQMWISKEEYDESGPGIVHRKCF 230
TFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 351 TFQQMWISKQEYDESGPGIVYRKCF 375
Score = 37.5 bits (83), Expect = 0.001
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -3
Query: 533 HETVYNSIMKCDVDIRK 483
HE YNSIMKCDVDIRK
Sbjct: 275 HEATYNSIMKCDVDIRK 291
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 79.4 bits (187), Expect = 4e-16
Identities = 36/83 (43%), Positives = 58/83 (69%)
Frame = -1
Query: 478 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTF 299
LY+N V+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 298 QQMWISKEEYDESGPGIVHRKCF 230
+++ I+ EEY ++ ++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 74.1 bits (174), Expect = 1e-14
Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 6/88 (6%)
Frame = -1
Query: 478 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILASL 308
L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 307 STFQQMWISKEEYDESGP---GIVHRKC 233
TF Q+WIS++EY+E G ++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 5e-14
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = -1
Query: 478 LYANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYSVWIGGSILASLS 305
L N V++GGT++ PG+++R+Q E+ LA S I + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 304 TFQQMWISKEEYDESG 257
FQ +W+SK+EYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 533 HETVYNSIMKCDVDIR 486
HE VY SI+ CD ++R
Sbjct: 325 HELVYQSILACDSELR 340
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 58.4 bits (135), Expect = 7e-10
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = -1
Query: 478 LYANTVMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPERKYSVWI 332
LY V+SGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 331 GGSILAS-LSTFQQMWISKEEYDESG 257
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.4 bits (110), Expect = 8e-07
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 14/96 (14%)
Frame = -1
Query: 484 RDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIK--------------IKIIAPPERK 347
+ LY N V+SGG+T++ +R+Q+++ + I + +I+ ++
Sbjct: 324 KGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQR 383
Query: 346 YSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 239
+VW GGS+LA F +K +Y+E G I R
Sbjct: 384 NAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.0 bits (104), Expect = 4e-06
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = -1
Query: 478 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTF 299
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 298 QQMWISKEEYDESGP 254
+ +++EEY E GP
Sbjct: 694 KAAKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 45.2 bits (102), Expect = 7e-06
Identities = 25/81 (30%), Positives = 39/81 (48%)
Frame = -1
Query: 478 LYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTF 299
L N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 298 QQMWISKEEYDESGPGIVHRK 236
I++ EY E G I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 41.9 bits (94), Expect = 7e-05
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 484 RDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 314
++LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 313 SLSTFQQMWISKEEYDESGPGIVHRK 236
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 337 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 236
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 412 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 302
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 469 WRTGPLRMSTSHFMMELYTVSWDARXIPYPQKGRLEKN 582
WR L+ F + + ++ A +PY +G LEKN
Sbjct: 542 WRNKSLKYKPFKFADQGFILTHYAADVPYSTEGWLEKN 579
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 174 ELGRAQHHTAPGSRGRAA*KHLRWT 248
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 386 DHQDQDHRSPREEVLRMDRWIHPG 315
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 183 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 16
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,202
Number of Sequences: 5004
Number of extensions: 39425
Number of successful extensions: 118
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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