Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P03_pT_M06
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical ... 50 1e-06
Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U56964-7|AAB54034.1| 382|Caenorhabditis elegans Hypothetical pr... 30 2.0
AC006641-12|AAF39810.1| 501|Caenorhabditis elegans Hypothetical... 30 2.0
AC006641-10|AAF39811.1| 501|Caenorhabditis elegans Hypothetical... 30 2.0
AC006641-8|AAF39822.1| 508|Caenorhabditis elegans Hypothetical ... 30 2.0
Z81526-2|CAB04265.1| 229|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical
protein F54A3.4 protein.
Length = 755
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -3
Query: 717 LKEGQKCVVLLPDSIRNYMTXFISDQWMEARNFKPL-IKNDK 595
L E VVLLPD IRNY+T F+ D WM+AR F IKND+
Sbjct: 629 LPEDANVVVLLPDGIRNYLTKFLDDDWMKARGFFGFCIKNDR 670
>Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -3
Query: 696 VVLLPDSIRNYMTXFISDQWMEARNF 619
VVLLPD IRNY+T F+ D WM R+F
Sbjct: 676 VVLLPDGIRNYITKFLDDDWMNERHF 701
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 738 AIQAAXSLKEGQKCVVLLPDSIRNYMTXFISDQWMEARNFKPLIKND 598
AI+ A L G VV+L D IRNY+ F+ D W+ A + + D
Sbjct: 282 AIKLAKELPAGSTIVVVLMDGIRNYLRHFLDDDWITANKKDVVTRKD 328
>Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -3
Query: 696 VVLLPDSIRNYMTXFISDQWMEARNF 619
VVLLPD IRNY+T F+ D WM R+F
Sbjct: 676 VVLLPDGIRNYITKFLDDDWMNERHF 701
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 738 AIQAAXSLKEGQKCVVLLPDSIRNYMTXFISDQWMEARNFKPLIKND 598
AI+ A L G VV+L D IRNY+ F+ D W+ A + + D
Sbjct: 282 AIKLAKELPAGSTIVVVLMDGIRNYLRHFLDDDWITANKKDVVTRKD 328
>U56964-7|AAB54034.1| 382|Caenorhabditis elegans Hypothetical
protein F52E4.8 protein.
Length = 382
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -2
Query: 358 KVLQGRLIEQTQLRACISNARHLPLRCSRQISFLCCPTCWNNHI*RFTLRY 206
++LQ R + + + + + + P SRQ + L C TC N + +F+L +
Sbjct: 48 QILQKRRLNENRPQTELKEQKTEPKTRSRQFAMLRCGTCSENFVSQFSLEH 98
>AC006641-12|AAF39810.1| 501|Caenorhabditis elegans Hypothetical
protein F45D11.16 protein.
Length = 501
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 72 SFSEQSHFYAYIEKKTIHFETTPFKQNITFLTN*EFPFTCLVSNEY 209
S + +FY Y+ +K +H+E K + F++ F+ ++S +
Sbjct: 351 SILTEDNFYLYVFEKNVHYEIHVVKPEMVFVSTNRGKFSVIISRAF 396
>AC006641-10|AAF39811.1| 501|Caenorhabditis elegans Hypothetical
protein F45D11.15 protein.
Length = 501
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 72 SFSEQSHFYAYIEKKTIHFETTPFKQNITFLTN*EFPFTCLVSNEY 209
S + +FY Y+ +K +H+E K + F++ F+ ++S +
Sbjct: 351 SILTEDNFYLYVFEKNVHYEIHVVKPEMVFVSTNRGKFSVIISRAF 396
>AC006641-8|AAF39822.1| 508|Caenorhabditis elegans Hypothetical
protein F45D11.14 protein.
Length = 508
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 72 SFSEQSHFYAYIEKKTIHFETTPFKQNITFLTN*EFPFTCLVSNEY 209
S + +FY Y+ +K +H+E K + F++ F+ ++S +
Sbjct: 358 SILTEDNFYLYVFEKNVHYEIHVVKPEMVFVSTNRGKFSVIISRAF 403
>Z81526-2|CAB04265.1| 229|Caenorhabditis elegans Hypothetical
protein F33H2.3 protein.
Length = 229
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -3
Query: 474 NVTGDNGSLVGLLTADNVRKKLSNMLAKTSDPLDKF----LVKKYYKVDLSNKPSLGLV 310
N GDN S L+ KK++ LA LD ++ +++DLSN PSLGL+
Sbjct: 73 NQLGDNASFDVLVKNAPDLKKIT--LASNKLSLDNLRCLKVLPNLFELDLSNNPSLGLL 129
>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical
protein C27A7.4 protein.
Length = 1403
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 684 PDSIRNYMTXFISDQWMEARNFKPLIKNDKLLWWDKHLTQDMVRPTK 544
P S+ Y I ++ + N + ND++ W K L+ D +P+K
Sbjct: 109 PSSVHLYSYMVIGEE-ISTSNIMQIELNDQITLWCKRLSYDKFKPSK 154
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,193
Number of Sequences: 27780
Number of extensions: 355928
Number of successful extensions: 796
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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