Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M06
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    87   1e-19

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 87.4 bits (207), Expect = 1e-19
 Identities = 47/151 (31%), Positives = 88/151 (58%), Gaps = 3/151 (1%)
 Frame = -3

Query: 738 AIQAAXSLKEGQKCVVLLPDSIRNYMTXFISDQWMEARNF-KPLIKNDKLLWWDKHLTQD 562
           A++ A  + E ++ V++LPD IRNY+T F+S+ WME R F +P+ +N+   WW      +
Sbjct: 315 ALKIAKDIPEEKRMVIILPDGIRNYLTKFVSEYWMETRGFLQPVCQNEMNKWWWNMKISN 374

Query: 561 MVRPTKSISHYSTTA--YAIATLKENPTPLLNVTGDNGSLVGLLTADNVRKKLSNMLAKT 388
           +    +S+   +T     A+  LK   + LL ++ DN  + G+++ + +   + + + K 
Sbjct: 375 LSFDKQSLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVISLNKLTSYVISGIVKC 434

Query: 387 SDPLDKFLVKKYYKVDLSNKPSLGLVSRMLD 295
           +D +DK +VK+Y KV   +  +LG +SR+L+
Sbjct: 435 TDFVDKAMVKQYVKV--KHSATLGYISRVLE 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,950
Number of Sequences: 438
Number of extensions: 4182
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)