Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M05
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...   103   1e-22
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    96   2e-20
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    31   0.97 
03_05_0161 + 21400580-21401695                                         30   1.7  
04_04_0387 + 24869594-24871480                                         27   9.0  
02_05_0250 + 27153048-27154453,27154546-27154885                       27   9.0  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score =  103 bits (247), Expect = 1e-22
 Identities = 57/135 (42%), Positives = 77/135 (57%)
 Frame = -3

Query: 551 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 372
           MPF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58

Query: 371 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 192
           ++          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR 
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118

Query: 191 RARTAVFKSLKVKAA 147
            A       LK  AA
Sbjct: 119 GAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 50/117 (42%), Positives = 70/117 (59%)
 Frame = -3

Query: 548 PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 369
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 368 LKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 198
           +          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 73  IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 67  GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 246
           G +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 388 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 483
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -3

Query: 305 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 126
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 125 K 123
           K
Sbjct: 557 K 557


>02_05_0250 + 27153048-27154453,27154546-27154885
          Length = 581

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = +3

Query: 6   LKSVFSHITCRRHKNNYFLXWFFGRLLGAHFFRSR-FRDIFLAEGTSTRSLHLQALEYGS 182
           LK +F HI    HK      W        H   SR + D    +   T +    A+E   
Sbjct: 518 LKYIFPHIAAMEHKEGAVALWL-------HSLNSRNYPDFRYMDNAGTEASIAAAVESVD 570

Query: 183 PGTVPLNSCS 212
            GTVP ++ S
Sbjct: 571 EGTVPSDNIS 580


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,688
Number of Sequences: 37544
Number of extensions: 341529
Number of successful extensions: 972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)