Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M05
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.2  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   9.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.6  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 367 SNTRSQPLLVL*GKRGQMLNSM 302
           + T S+P+LVL G R ++L S+
Sbjct: 273 AQTGSEPMLVLSGPRTRLLGSV 294


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 367 SNTRSQPLLVL*GKRGQMLNSM 302
           + T S+P+LVL G R ++L S+
Sbjct: 273 AQTGSEPMLVLSGPRTRLLGSV 294


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 403 ICCLGTPLPGPSTSARVWSITSTTLTNF 486
           I CL  P PG S ++    +    L+N+
Sbjct: 5   ISCLVAPFPGASANSEAKRLYDDLLSNY 32


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 582 CTLKKHRP 605
           CTL+KH+P
Sbjct: 1   CTLRKHKP 8


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 115 GIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVICARFSLFANF 273
           GI  L K P+R++     L       ++L   +V++      +  RFS F  F
Sbjct: 543 GITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRF 595


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 144 CWYLRQEKYP*SGCEKSAHQEGDQKTXLR 58
           C Y R +K    G ++ A QE  Q+T  R
Sbjct: 162 CQYCRYQKCLAMGMKREAVQEERQRTKER 190


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 144 CWYLRQEKYP*SGCEKSAHQEGDQKTXLR 58
           C Y R +K    G ++ A QE  Q+T  R
Sbjct: 162 CQYCRYQKCLAMGMKREAVQEERQRTKER 190


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 60  LXWFFGRLLGAHFFRSRFRDIFLAEGTSTRSLHL 161
           + WF  R   A FFR   +    A GT++ +  L
Sbjct: 334 IFWFLTRQNPAAFFRGMMQAWMTALGTASSAATL 367


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 399 LKPTPSHKIPPQI 361
           +K  P HK+PP I
Sbjct: 62  VKYLPGHKLPPNI 74



 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 328 KRGQMLNSMKNGQKVNGP 275
           K  ++   M NGQK+ GP
Sbjct: 284 KISELEKEMLNGQKLQGP 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,678
Number of Sequences: 438
Number of extensions: 3634
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)