Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M04
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   3.8  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   6.6  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    25   8.8  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    25   8.8  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 358 GESSNNNLLFTTDGHFFN 411
           G+   +NLL T DGHFF+
Sbjct: 656 GDRHLDNLLITKDGHFFH 673


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +1

Query: 247  YFKQLHKLAHFTSTRYTSLFSKLLCSYDFHFLH*RYFGESSNNNLLFTTDGHFFNLSPIQ 426
            Y ++ ++L   T  RY+ LF  LLC++    +      +  +    F     FF L    
Sbjct: 1754 YTRKQNQLRRRTFYRYSLLFFALLCTFVAMIVVPLVLDQKLSYQFKFENSVKFFRLMQPS 1813

Query: 427  DGALTSTLHN 456
             G L +T  N
Sbjct: 1814 LGVLPNTNKN 1823


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 10  ASQTDRNQKNMNIS---DIYRFYTKKSPHFIP*SIPTPLFDLVQISLR 144
           +++  ++ K+ N+S   D  +FY KK P  +P + PT   D   + ++
Sbjct: 123 STRVSKDSKDDNVSFSSDKKQFYVKKEPFPVPCTEPTTSGDRYTVRMK 170


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 305 FQNCYVHMIFTSYTSAISVSLPTTTCCLLQMDTFSTC 415
           F+N  +   + SY + I++S+P T    +Q+ T+ TC
Sbjct: 159 FRNEGLGAFYISYPTCIAMSIPFTA---IQVATYDTC 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,640
Number of Sequences: 5004
Number of extensions: 50562
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)