Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P03_pT_M04
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1055 - 23612968-23613038,23614625-23614763,23614854-236150...    29   3.9  
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863...    29   3.9  

>07_03_1055 -
           23612968-23613038,23614625-23614763,23614854-23615021,
           23615341-23616045,23616647-23616847
          Length = 427

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 293 TLHSFQNCYVHMIFTSYTSAISVSLPTTTCCLLQMDTFSTC 415
           T HS + C +     +  +A+S+    +TCC+   D  S C
Sbjct: 41  TTHSPRGCVLLRFRPAAAAAVSIPSVESTCCIFVSDFVSVC 81


>01_06_1742 -
           39585879-39585994,39586089-39586238,39586288-39586375,
           39586479-39586640,39586753-39586877,39586992-39587030,
           39587290-39587476,39587643-39587713,39589371-39589564,
           39589656-39589767,39589899-39590082,39590177-39590503,
           39590780-39591061,39591148-39591621,39591730-39591813,
           39591850-39591939,39592024-39592247,39592503-39592600,
           39592679-39593169,39593249-39593520,39594266-39594522,
           39594672-39594890,39595007-39595167,39595249-39595441,
           39595528-39595633,39595947-39596121,39596404-39596556,
           39596663-39596794,39597120-39597184,39597754-39597819,
           39598433-39598511,39598587-39598767,39598864-39598976
          Length = 1889

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 281 LQPDTLHSFQNCYVHMIFTSYTSAISVSLPTTTCCL 388
           +Q DTL SF++  V+++FT+  +   + +P  +C +
Sbjct: 409 MQKDTLDSFRSGKVNLLFTTDVAEEGIHVPECSCVI 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,029,112
Number of Sequences: 37544
Number of extensions: 285572
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)